YRC Public Data Repository - Protein Structure Prediction

Protein:	rrn3
Organism:	Schizosaccharomyces pombe
Length:	599 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rrn3.

Description	E-value	Query Range	Subject Range
gi\|109127665 - gi\|109127665\|ref\|XP_001108222.1\| PREDICTED: similar to Tif-IA CG3278-PA isoform 2 [Macaca mulatta]	669.0	[0..14]	[592..17]
RRN3 - RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)	663.0	[0..21]	[592..24]
gi\|73959061 - gi\|73959061\|ref\|XP_536965.2\| PREDICTED: similar to RRN3 RNA polymerase I transcription factor homolo...	644.0	[0..20]	[599..23]
RRN3_MOUSE - RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus GN=Rrn3 PE=1 SV=1	639.0	[0..25]	[592..26]
RRN3_PONAB - RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii GN=RRN3 PE=2 SV=1 RRN3_PONPY - RNA polymerase I-specific transcription initiation factor RRN3 - Pongo pygmaeus (Orangutan)	638.0	[0..20]	[592..23]
gi\|109489580, gi... - gi\|109489580\|ref\|XP_001075816.1\| PREDICTED: similar to RRN3 RNA polymerase I transcription factor ho...	631.0	[0..13]	[592..14]
gi\|42553926, gi\|... - gi\|46125417\|ref\|XP_387262.1\| hypothetical protein FG07086.1 [Gibberella zeae PH-1], gi\|42553926\|gb\|E...	622.0	[0..14]	[577..39]
gi\|114661146 - gi\|114661146\|ref\|XP_001143837.1\| PREDICTED: RRN3 RNA polymerase I transcription factor homolog, part...	600.0	[0..91]	[592..28]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSIISSTNP QYINKCVNNG TMASSTNVPD RTVGSKSFAS SVSKNDGRLM QQMLRAFVNK  60
   61 ALDDKAEGNF AGYEDLRRQF AAKSDTKDAP SSLQLQNLLS ALTCNVSRLD SSNSSLVMSV 120
  121 LDSVWVSRDE SFVRCYTRFL GNLISAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-357]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNYLPLVMTM LIQHMLYRPD SLAIHYEHAH MALKYVLELV PRAHSFLYSS ILEEFPYKDE  60
   61 SLLAQMTYIS NVLSICEYVP SIKGPVLHAI IDKIIQIDVE IQVEVDDDDE EEDEVVTDDD 120
  121 GTSNADSEVI TASTLYERHT AISSEMTSST ILTPPSLTDT RQLMQQLDQL LYTLFSYLDS 180
  181 NLKSTSRDRY LVYNSLIKSF VNTVLKTFRC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [358-481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYTQFLIFWA SQLDPEFTDI FLGVLTEVCL DPSQPYTLRL SGAMYIGSYV ARAKALEKNT  60
   61 IQIIVNMMTR WVEAYLDQCE NELSDDLLSK HSVFYAINQS IFYIFCFRWR ELCVSDESES 120
  121 MEPR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [482-599]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNEWIPGLEI LHRSVLSRLN PLRYCSPNIV LQFAKVANHL NFMYVYSIIE QNRKGIFREG  60
   61 FDTMDAYFPF DPYRLTKSSI IVQPFYNEWQ QIPGLDDDEE EEDTDYESST VMLGESPF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits