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Protein Overview: SPAC18B11.06

General Information:
Name(s) found: SPAC18B11.06 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • U3 snoRNP-associated protein Lcp5 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 327 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [RCALink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVLNKSIQT ALEALPKTSS SSSDGVSLVS LKCQLLLSYV QKLAFLMLVK LDDESFLQHQ  60
   61 DVVEKLVQLR IEIEKIRPLE NRIQYSVDKL LRAAGRKEEI GSIKEPENNG NDKDSQDSLK 120
  121 LHYKPNLSEF ADDSDGPASE NNVVKEDDKS SISSEDEEEE LRSAKDGIYR PPRIRAVTMD 180
  181 SEKRTRHRPN HLVDEFVSSD MSSVPQSMPS VGSNLEKRGR VIHADERELQ KMRERIEYEE 240
  241 SNYTRLPKLS KKDLKKSKRV KKHDYGGEDW SLLDRKFHDD DFSNRKLDLT SRAKRRANFE 300
  301 DVNDGSLASP VQIGQSYRKR KKNLKRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] Pfam 5.200659 No description for PF04000.6 was found. Confident ab initio structure predictions are available.
    2 View Details [77..327] MSA 1.055988 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle