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Protein Overview: ptr6

General Information:
Name(s) found: ptr6 / SPAC13F5.02c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • transcription factor TFIID complex subunit Taf7 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 393 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    transcription factor TFIID complex [TASLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: regulation of transcription [ICLink to PubMed article]
    poly(A)+ mRNA export from nucleus [IMPLink to PubMed article]
    transcription initiation from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: general RNA polymerase II transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLKIRAVQ PPPNDSRSST PATGPPPPIP KIKIKTREPK GPRLTKIRLK RVREPGLGYD  60
   61 SEASDREEDT YIEEQIILRL PPGEDCEYVR KAIENREVGR GADIWVKFKD QRRAVVHVNG 120
  121 HLYAAKLVDL PCIIESNKSF DKKVIFKAAD ICQMLIATER IEHENSVLNT QLKQADYIYP 180
  181 HGLTTPMHWV RQKRFRKRVS NRTIEAVENE VDRLLAMDER AESTSNELID QAQLARDSSI 240
  241 ALSEDTSFDG MAGLRGTSID RDDQSVQTDM FDGMDEDDLA GQIEQGMLEL SQDTRESTAE 300
  301 PRAAGEESAS EEEEEEEEEE EEENEADDET RENKRQNRLV REFISELESS IQKRRKDADE 360
  361 ATNPILRNRF LADVNRMVTE LELKRTQLVD NPE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..232] Pfam 91.154902 No description for PF04658.4 was found. No confident structure predictions are available.
    2 View Details [233..393] MSA 3.085996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle