YRC Public Data Repository - Protein Structure Prediction

Protein:	ptr6
Organism:	Schizosaccharomyces pombe
Length:	393 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ptr6.

Description	E-value	Query Range	Subject Range
gi\|32420175, gi\|... - gi\|32420175\|ref\|XP_330531.1\| hypothetical protein [Neurospora crassa], gi\|28925608\|gb\|EAA34629.1\| pr... gi\|85111287 - gi\|85111287\|ref\|XP_963865.1\| hypothetical protein NCU03095 [Neurospora crassa OR74A]	297.0	[0..8]	[393..126]
gi\|46108240, gi\|... - gi\|46108240\|ref\|XP_381178.1\| hypothetical protein FG01002.1 [Gibberella zeae PH-1], gi\|42544962\|gb\|E...	285.0	[0..2]	[389..62]
gi\|12856201 - gi\|12856201\|dbj\|BAB30600.1\| unnamed protein product [Mus musculus]	284.0	[0..13]	[393..56]
gi\|67901144, gi\|... - gi\|67901144\|ref\|XP_680828.1\| hypothetical protein AN7559.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	272.0	[0..11]	[390..72]
TAF7_CRIGR - Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus GN=TAF7 PE=1 SV=1	259.0	[0..61]	[393..1]
gi\|57043483 - gi\|57043483\|ref\|XP_544308.1\| PREDICTED: similar to TATA box-binding protein-associated factor 2F [Ca...	252.0	[0..61]	[385..1]
TAF7 - TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa gi\|109079065 - gi\|109079065\|ref\|XP_001092471.1\| PREDICTED: similar to TATA box-binding protein-associated factor 2F... gi\|123979972, gi... - gi\|168277908\|dbj\|BAG10932.1\| transcription initiation factor TFIID subunit 7 [synthetic construct], ... gi\|55625158 - gi\|55625158\|ref\|XP_527047.1\| PREDICTED: TATA box-binding protein-associated factor 2F isoform 2 [Pan... TAF7_PONPY - Transcription initiation factor TFIID subunit 7 - Pongo pygmaeus (Orangutan) TAF7_MACFA - Transcription initiation factor TFIID subunit 7 OS=Macaca fascicularis GN=TAF7 PE=2 SV=1 TAF7_PONAB - Transcription initiation factor TFIID subunit 7 OS=Pongo abelii GN=TAF7 PE=2 SV=1	251.0	[0..61]	[385..1]
gi\|50745656 - gi\|50745656\|ref\|XP_420187.1\| PREDICTED: similar to transcription factor IID [Gallus gallus]	251.0	[0..61]	[393..1]
gi\|149017311, gi... - gi\|34878802\|ref\|XP_226031.2\| PREDICTED: similar to Transcription initiation factor TFIID subunit 7 (...	250.0	[0..61]	[385..1]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLKIRAVQ PPPNDSRSST PATGPPPPIP KIKIKTREPK GPRLTKIRLK RVREPGLGYD  60
   61 SEASDREEDT YIEEQIILRL PPGEDCEYVR KAIENREVGR GADIWVKFKD QRRAVVHVNG 120
  121 HLYAAKLVDL PCIIESNKSF DKKVIFKAAD ICQMLIATER IEHENSVLNT QLKQADYIYP 180
  181 HGLTTPMHWV RQKRFRKRVS NRTIEAVENE VDRLLAMDER AESTSNELID QA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	91.154902
Match:	PF04658.4
Description:	No description for PF04658.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [233-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLARDSSIAL SEDTSFDGMA GLRGTSIDRD DQSVQTDMFD GMDEDDLAGQ IEQGMLELSQ  60
   61 DTRESTAEPR AAGEESASEE EEEEEEEEEE ENEADDETRE NKRQNRLVRE FISELESSIQ 120
  121 KRRKDADEAT NPILRNRFLA DVNRMVTELE LKRTQLVDNP E

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits