Protein Overview: smd3

General Information:
Name(s) found:	smd3 / SPBC19C2.14 [Sanger Pombe]
Description(s) found: SHOW ONLY BEST	pir\|\|T39805 probable small nuclear ribonucleoprotein Sm D3 - fission yeast (Schizosaccharomyces pombe) [NCBI NR] gi\|5689996\|emb\|CAB52041.1\| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe] [NCBI NR] gi\|19112491\|ref\|NP_595699.1\| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe] [NCBI NR] gi\|12230614\|sp\|Q9UUC6.1\|SMD3_SCHPO RecName: Full=Probable small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3 [NCBI NR] Sm snRNP core protein Smd3 [Sanger Pombe] Probable small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces pombe GN=smd3 PE=2 SV=1 [Swiss-Prot] SMALL NUCLEAR RIBONUCLEOPROTEIN; PUTATIVE PRE- MRNA SPLICING FACTOR; SIMILAR TO S. CEREVISIAE SMD3: Q9UUC6; [pompepVF.fasta] SMALL NUCLEAR RIBONUCLEOPROTEIN; PUTATIVE PRE-MRNA SPLICING FACTOR; SIMILAR TO S. CEREVISIAE SMD3: Q9UUC6; [pompepV13] Probable small nuclear ribonucleoprotein Sm D3 (snRNP core protein D3) (Sm-D3) [pompep4896] \|smd3\|\|small nuclear ribonucleoprotein [pompepnew.fasta] \|smd3\|\|small nuclear ribonucleoprotein (snRNP)\|Schizosaccharomyces pombe\|chr 2\|\|\|Manual [pombe041504.fasta] probable small nuclear ribonucleoprotein Sm D3 [Schizosaccharomyces pombe]gi\|5689996\|emb\|CAB52041.1\| SPBC19C2.14 [Schizosaccharomyces pombe]gi\|12230614\|sp\|Q9UUC6\|SMD3_SCHPO Probable small nuclear ribonucleoprotein Sm D3 (snRNP core protein D3) (Sm-D3)g [nrdb_11152004_Chlamydomonas] \|smd3\|\|small nuclear ribonucleoprotein \|Schizosaccharomyces pombe\|chr 2\|\|\|Manual [pompep2242005.fasta] (Q9UUC6) Probable small nuclear ribonucleoprotein Sm D3 (snRNP core protein D3) (Sm-D3) [pompep4896_normal_reversed] \|smd3\|\|Sm snRNP core protein Smd3\|Schizosaccharomyces pombe\|chr 2\|\|\|Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta] SPBC19C2.14 [Schizosaccharomyces pombe] [nr-271106-contam.fasta] hypothetical protein SPBC19C2.14 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta] Small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smd3 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
Organism:	Schizosaccharomyces pombe
Length:	97 amino acids
Gene Ontology:
Cellular Component:	commitment complex [ISS] nucleus [IDA] U4/U6 x U5 tri-snRNP complex [ISS] U1 snRNP [IDA]
Biological Process:	RNA splicing, via transesterification reactions [ISS] nuclear mRNA splicing, via spliceosome [ISS]
Molecular Function:	mRNA binding [ISS]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MSLCIKLLHE TQGHIVTMEL ENGSTYRGKL IEAEDNMNCQ MRDISVTARD GRVSHLDQVY 60 61 IRGSHIRFLI VPDMLRNAPM FKVGPGRSVP LPTRGRR

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..97]	PSI-BLAST	15.09691	D3 core SNRNP protein

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle