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Protein Overview: sec17

General Information:
Name(s) found: sec17 / SPAC959.02 [Sanger Pombe]
Description(s) found:
Found 15 descriptions.
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  • alpha SNAP [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 289 amino acids

    Gene Ontology:
    Cellular Component: SNARE complex [ICLink to PubMed article]
    endoplasmic reticulum [IEA]
    Golgi apparatus [IEA]
    extrinsic to membrane [IEA]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    vacuole fusion, non-autophagic [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    Molecular Function: soluble NSF attachment protein activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIADPDQLMQ KAAKKAQGTG GFALFGGGNK YDEASELFLD AANGYRLQKQ GSAAGYAFEK  60
   61 AAEMQLKTDD KDDAASTYVE AFKSYRREKP SEAARVLQIA IELFTRRGNF RRAANYKMDL 120
  121 GDIFEQELQD TKAALGAYED AGEWYSSDQA DALANKAYLK AADLAGLCGE YSLAIRKFEQ 180
  181 VARASVQNNL LKWSVKDYLL KAGLCYMANG DEIATRRALE HFLEIDPSFA STREYQLLKD 240
  241 LQDTIEASDA NMFADKVFTY DQLSKLDSWK TTILLKIKSS IQEAEDDLT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..289] PSI-BLAST 25.30103 Vesicular transport protein sec17

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • soluble NSF attachment protein activity
    		•  5.88260989493554 bayes_pls_golite062009
  • binding
    		•  2.09193012129784 bayes_pls_golite062009
  • protein binding
    		•  1.52807685989528 bayes_pls_golite062009
  • signal sequence binding
    		•  1.13935627118933 bayes_pls_golite062009
  • peroxisome targeting sequence binding
    		•  0.158175726439206 bayes_pls_golite062009
  • syntaxin binding
    		•  0.0598606763736398 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle