YRC Public Data Repository - Protein Structure Prediction

Protein:	sec17
Organism:	Schizosaccharomyces pombe
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec17.

Description	E-value	Query Range	Subject Range
gi\|25534507 - pir\|\|AH2108 hypothetical protein all2423 [imported] - Nostoc sp. (strain PCC 7120) gi\|17229915, gi\|... - gi\|17229915\|ref\|NP_486463.1\| hypothetical protein all2423 [Nostoc sp. PCC 7120], gi\|17131515\|dbj\|BAB...	162.0	[0..6]	[269..339]
gi\|115374809, gi... - gi\|115374809\|ref\|ZP_01462084.1\| tetratricopeptide repeat family [Stigmatella aurantiaca DW4/3-1], gi...	158.0	[0..2]	[285..201]
TTC28 - tetratricopeptide repeat domain 28	158.0	[0..2]	[286..85]
K1043_MOUSE, TTC... - Tetratricopeptide repeat protein 28 OS=Mus musculus GN=Ttc28 PE=2 SV=2, (Q80XJ3) TPR repeat-containi...	156.0	[0..2]	[286..85]
gi\|116751398, gi... - gi\|71545433\|ref\|ZP_00666364.1\| TPR repeat:TPR-related region [Syntrophobacter fumaroxidans MPOB], gi...	155.0	[0..3]	[264..95]
gi\|113476999, gi... - gi\|113476999\|ref\|YP_723060.1\| peptidase-like [Trichodesmium erythraeum IMS101], gi\|110168047\|gb\|ABG5...	154.0	[0..2]	[287..257]
gi\|72397234, gi\|... - gi\|73670072\|ref\|YP_306087.1\| hypothetical protein Mbar_A2597 [Methanosarcina barkeri str. Fusaro], g...	153.0	[0..1]	[287..859]
gi\|186469182, gi... - gi\|53687334\|ref\|ZP_00107980.2\| COG0457: FOG: TPR repeat [Nostoc punctiforme PCC 73102], gi\|186686830...	153.0	[0..1]	[286..149]
gi\|47224733 - gi\|47224733\|emb\|CAG00327.1\| unnamed protein product [Tetraodon nigroviridis]	152.0	[0..2]	[288..1154]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIADPDQLMQ KAAKKAQGTG GFALFGGGNK YDEASELFLD AANGYRLQKQ GSAAGYAFEK  60
   61 AAEMQLKTDD KDDAASTYVE AFKSYRREKP SEAARVLQIA IELFTRRGNF RRAANYKMDL 120
  121 GDIFEQELQD TKAALGAYED AGEWYSSDQA DALANKAYLK AADLAGLCGE YSLAIRKFEQ 180
  181 VARASVQNNL LKWSVKDYLL KAGLCYMANG DEIATRRALE HFLEIDPSFA STREYQLLKD 240
  241 LQDTIEASDA NMFADKVFTY DQLSKLDSWK TTILLKIKSS IQEAEDDLT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1qqeA
Description:	Vesicular transport protein sec17
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
soluble NSF attachment protein activity	5.88260989493554	bayes_pls_golite062009
binding	2.09193012129784	bayes_pls_golite062009
protein binding	1.52807685989528	bayes_pls_golite062009
signal sequence binding	1.13935627118933	bayes_pls_golite062009
peroxisome targeting sequence binding	0.158175726439206	bayes_pls_golite062009
syntaxin binding	0.0598606763736398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: