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Protein Overview: rps001

General Information:
Name(s) found: rps001 / SPBC685.06 [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • 40S ribosomal protein S0A (p40) [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 292 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosolic ribosome [RCALink to PubMed article]
    cytosol [IDALink to PubMed article]
    small ribosomal subunit [TASLink to PubMed article]
    Biological Process: ribosomal small subunit biogenesis [IMPLink to PubMed article]
    translation [ICLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    structural constituent of ribosome [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVGRPNIL NATDEDIKQL LAANCHIGSK NLEVRMDNYV WKRRSDGVHI LNLGKTWEKL  60
   61 VLAARVIATI ENPADVCVVS TRTYGHRAVL KFAAHTGATA IAGRFTPGNF TNYITRTYRE 120
  121 PRLIVVTDPR ADAQAIKEAS FVNIPVIALC DTDSILNHVD IAIPTNNKGR KSIGLIWYLL 180
  181 AREVLRVRGT LSRSAPWDVM PDLYFYRDPE EVEREEEAKK AAAAAAEEAQ VEEAVAAAEF 240
  241 EITDSAAGSV DPNVLAAATA GQVGENTWEG AGDWNTTGAA QTSDWTAAAE AQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..199] PSI-BLAST 57.045757 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
    2 View Details [200..292] MSA 2.172981 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle