YRC Public Data Repository - Protein Structure Prediction

Protein:	rps001
Organism:	Schizosaccharomyces pombe
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps001.

Description	E-value	Query Range	Subject Range
gi\|61370578, gi\|... - gi\|61370584\|gb\|AAX43520.1\| laminin receptor 1 [synthetic construct], gi\|61370578\|gb\|AAX43519.1\| lami...	383.0	[0..4]	[290..2]
gi\|30047125 - gi\|30047125\|gb\|AAH50688.1\| Ribosomal protein SA [Homo sapiens]	383.0	[0..4]	[290..2]
RSSA_CHLAE - 40S ribosomal protein SA OS=Chlorocebus aethiops GN=RPSA PE=2 SV=3 gi\|90075168 - gi\|90075168\|dbj\|BAE87264.1\| unnamed protein product [Macaca fascicularis] ENSCJAT00000009364 - null gi\|109041469, gi... - gi\|109041484\|ref\|XP_001083829.1\| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa lam...	382.0	[0..4]	[290..2]
gi\|114579031 - gi\|114579031\|ref\|XP_001154496.1\| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa lam...	382.0	[0..4]	[290..2]
gi\|73963290, gi\|... - gi\|73963292\|ref\|XP_866616.1\| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin...	382.0	[0..4]	[290..2]
RSSA_RAT - 40S ribosomal protein SA OS=Rattus norvegicus GN=Rpsa PE=1 SV=3	382.0	[0..4]	[290..2]
RSSA_PIG - 40S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=1 SV=3	382.0	[0..4]	[290..2]
RSSA_MOUSE - 40S ribosomal protein SA OS=Mus musculus GN=Rpsa PE=1 SV=4 gi\|148237408, gi... - gb\|AAH84019.1\| Unknown (protein for MGC:98191) [Xenopus laevis], gi\|148237408\|ref\|NP_001091273.1\| h... gi\|228997 - gi\|228997\|prf\|\|1815216A laminin receptor	381.0	[0..4]	[290..2]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVGRPNIL NATDEDIKQL LAANCHIGSK NLEVRMDNYV WKRRSDGVHI LNLGKTWEKL  60
   61 VLAARVIATI ENPADVCVVS TRTYGHRAVL KFAAHTGATA IAGRFTPGNF TNYITRTYRE 120
  121 PRLIVVTDPR ADAQAIKEAS FVNIPVIALC DTDSILNHVD IAIPTNNKGR KSIGLIWYLL 180
  181 AREVLRVRGT LSRSAPWDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.045757
Match:	1s1hB
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [200-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDLYFYRDP EEVEREEEAK KAAAAAAEEA QVEEAVAAAE FEITDSAAGS VDPNVLAAAT  60
   61 AGQVGENTWE GAGDWNTTGA AQTSDWTAAA EAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits