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Protein Overview: rpb9

General Information:
Name(s) found: rpb9 / SPAPYUG7.04c [Sanger Pombe]
Description(s) found:
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  • gi|6723910|emb|CAB66313.1| DNA-directed RNA polymerase II complex subunit Rpb9 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|3582120|dbj|BAA33021.1| RNA polymerase II subunit 9 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115617|ref|NP_594705.1| DNA-directed RNA polymerase II complex subunit Rpb9 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|18026867|gb|AAL55660.1|AF237418_2 RNA polymerase II specific subunit Rpb9 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|15214253|sp|O74635.1|RPB9_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB9; Short=RNA polymerase II subunit B9; AltName: Full=DNA-directed RNA polymerase II subunit 9; AltName: Full=DNA-directed RNA polymerase II 13.2 kDa polypeptide [NCBI NR]
  • pir||T43279 DNA-directed RNA polymerase (EC 2.7.7.6) II chain RPB9 [similarity] - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • DNA-directed RNA polymerase II complex subunit Rpb9 [Sanger Pombe]
  • DNA-directed RNA polymerase II subunit RPB9 OS=Schizosaccharomyces pombe GN=rpb9 PE=1 SV=1 [Swiss-Prot]
  • DNA-DIRECTED RNA POLYMERASE II SUBUNIT: AAL55660;O74635; [pompepVF.fasta]
  • DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9: O74635; [pompepV13]
  • DNA-directed RNA polymerase II 13.2 kDa polypeptide (EC 2.7.7.6) [pompep4896]
  • |rpb9||DNA-directed RNA polymerase II subunit (PMID 9852944) [pompepnew.fasta]
  • DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6) (DNA-directed RNA polymerase II 13.2 kDa polypeptide) [4896.FASTAC]
  • |rpb9||DNA-directed RNA polymerase (II subunit) (PMID 9852944)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • RNA polymerase II subunit 9 [Schizosaccharomyces pombe]gi|18026867|gb|AAL55660.1| RNA polymerase II specific subunit Rpb9 [Schizosaccharomyces pombe]gi|6723910|emb|CAB66313.1| rpb9 [Schizosaccharomyces pombe]gi|3582120|dbj|BAA33021.1| RNA polymerase II [nrdb_11152004_Chlamydomonas]
  • |rpb9||DNA-directed RNA polymerase |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O74635) DNA-directed RNA polymerase II 13.2 kDa polypeptide (EC 2.7.7.6) [pompep4896_normal_reversed]
  • |rpb9||DNA-directed RNA polymerase II complex subunit Rpb9|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • RNA polymerase II specific subunit Rpb9 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAPYUG7.04c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • RNA polymerase II subunit 9 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • SPAPYUG7.04c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • DNA-directed RNA polymerase II subunit 9 (DNA-directed RNA polymerase II 13.2 kDa polypeptide) [nr-271106-contam.fasta]
  • DNA-directed RNA polymerase II subunit RPB9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb9 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 113 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    DNA-directed RNA polymerase II, holoenzyme [TASLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: transcription-coupled nucleotide-excision repair [ISSLink to PubMed article]
    transcription from RNA polymerase II promoter [ICLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    zinc ion binding [IEA]
    DNA-directed RNA polymerase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFQYCIEC NNMLYPREDK VDRVLRLACR NCDYSEIAAT SKVYRHELQS SNVENTTVSH  60
   61 DASTDPTLPR SDKECPRCHQ HEAVFYQTHS RRGDTMMTLI YVCVHCGFAF EEQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..113] PSI-BLAST 29.30103 RBP9 subunit of RNA polymerase II


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle