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Protein Overview: rpb6

General Information:
Name(s) found: rpb6 / SPCC1020.04c [Sanger Pombe]
Description(s) found:
Found 24 descriptions.
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  • DNA-directed RNA polymerase I, II and III subunit Rpb6 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 142 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    DNA-directed RNA polymerase I complex [IGILink to PubMed article]
    DNA-directed RNA polymerase II, holoenzyme [IGILink to PubMed article]
    cytosol [IDALink to PubMed article]
    DNA-directed RNA polymerase III complex [IGILink to PubMed article]
    Biological Process: transcription from RNA polymerase III promoter [ICLink to PubMed article]
    transcription from RNA polymerase I promoter [ICLink to PubMed article]
    RNA elongation [TASLink to PubMed article]
    transcription from RNA polymerase II promoter [ICLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [IGILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDYEEDEAF GMDGAVMEEE VDELEMIDEN GQSQQGVSHP GEPSTTVITE DVASSKTAQS  60
   61 GKAVAKEDRT TTPYMTKYER ARILGTRALQ ISMNAPVLVD LEGETDPLQI AMKELAQKKI 120
  121 PLLVRRYLPD GSYEDWSVAE LI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] PSI-BLAST 43.0 RPB6

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  8.95763217796707 bayes_pls_golite062009
  • RNA polymerase activity
    		•  8.95763217796707 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  6.40098308297479 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  4.33401073482737 bayes_pls_golite062009
  • transferase activity
    		•  3.84777794959854 bayes_pls_golite062009
  • binding
    		•  2.4602171483686 bayes_pls_golite062009
  • DNA binding
    		•  1.9558633290744 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.91068858292286 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle