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Protein Overview: rpb5

General Information:
Name(s) found: rpb5 / SPAC23C4.15 [Sanger Pombe]
Description(s) found:
Found 24 descriptions.
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  • DNA-directed RNA polymerase I, II and III subunit Rpb5 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 210 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    DNA-directed RNA polymerase I complex [IGILink to PubMed article]
    DNA-directed RNA polymerase II, holoenzyme [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    DNA-directed RNA polymerase III complex [IGILink to PubMed article]
    Biological Process: transcription from RNA polymerase III promoter [IGILink to PubMed article]
    transcription from RNA polymerase I promoter [IGILink to PubMed article]
    transcription from RNA polymerase II promoter [IDALink to PubMed article]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [IGILink to PubMed article]
    protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEEKNIVR VFRAWKTAHQ LVHDRGYGVS QAELDLTLDQ FKAMHCGMGR NLDRTTLSFY  60
   61 AKPSNDSNKG TIYIEFAKEP SVGIKEMRTF VHTLGDHNHK TGILIYANSM TPSAAKIIAT 120
  121 VTGQFTIETF QESDLIVNIT HHELVPKHIL LSPDEKKELL DRYKLRETQL PRIQLADPVA 180
  181 RYLGLKRGEV VKIVRRSETS GRYNSYRICA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..210] PSI-BLAST 78.69897 Eukaryotic RPB5 N-terminal domain; Eukaryotic RPB5 C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle