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Protein Overview: rhp42

General Information:
Name(s) found: rhp42 / SPCC4G3.10c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • DNA repair protein Rhp42 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 686 amino acids

    Gene Ontology:
    Cellular Component: nucleotide-excision repair complex [ISSLink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: nucleotide-excision repair [IGILink to PubMed article]
    mismatch repair [IGILink to PubMed article]
    Molecular Function: damaged DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKRKASKN SVRGRKRRTR TNNLPLNPEV KEETVVSSTH RQTRSQSKKP SLSSSAEPPS  60
   61 ESLDDNISAL NSLQRSASSS EKGSDEDNEK LGSSEDDEFD DDFDTWEQVD LSPNKQEDKK 120
  121 DLHIVTQHIT PQLTKESKKG SSSAMDKSIR LSIHIMHFTC LLYHGSVRNR WLMNSLLLDG 180
  181 LRDLLVEKQP SVVEAWVCSS QTHEDLLKLL NGLRMWWNKS FKIESHGLRK LGYRTLKQGF 240
  241 DIGFSPEIFH NFHEYQASLL SLKGSRDLAA QGFTALCRSL NLKARLIFSL QPLTFSTASY 300
  301 DDWSPHILPE ETSTSIDDDL RYPIFWTEIY DQSEKKWIAV DAVVLNGVYT NDMTWFEPKG 360
  361 AYAESKHLRM GIVAAYDNDL YAKDVTLRYT DYQSSRLKKI RHVSFADKYF DFYKAIFGQL 420
  421 AKRNKDAEDI YEEKELESKV PIREPKSFAD FKNHPEFVLI RHLRREEALL PNAKPVKTAT 480
  481 FGNGKKATSE EVYLRKDVVI CKTPENYHKE GRVIKEGEQP RKMVKARAVT ISRKREHEFR 540
  541 VAETNEPVLQ GLYSSDQTEL YVPPPIKDGI IPKNGYGNMD CFVESMIPKG AAHLPYRGIA 600
  601 KIAKKLNIDY ADAVTGFEFR KHRAIPVTTG IIVPEESAQM VYEEFLECEK IRIEKQQMKE 660
  661 RKIIYGQWKH LLNALRIRKR IEEQYA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] MSA 2.040987 View MSA. No confident structure predictions are available.
    2 View Details [112..686] PSI-BLAST 133.0 No description for 2qshA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle