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Protein Overview: SPAC2F7.17

General Information:
Name(s) found: SPAC2F7.17 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • peptide chain release factor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 396 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    mitochondrion [ISSLink to PubMed article]
    Biological Process: positive regulation of translational termination [ICLink to PubMed article]
    translational termination [ISSLink to PubMed article]
    mitochondrial translation [RCALink to PubMed article]
    translation [ISSLink to PubMed article]
    Molecular Function: translation release factor activity [ISSLink to PubMed article]
    translation release factor activity, codon specific [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLTKKVLWY FRHGIEYQIR SIACKKGYSE HNVSRVLIEK ARSLSSEYLQ FHQVNNKDQS  60
   61 AMTNDTDLAK RIARLRRVHN AYSKFKSLSE QISDLKQMEA QESDAEVKMM AVTEINEISN 120
  121 KIPKSIEDLE NTLLPQADSY ALPALIEIRP GVGGTEAAIF ANELVEMYFQ YANFKGWNCK 180
  181 FISKSAVQGL EAITEAIFSI EGEGAYGHLM LEGGVHRVQR TPATETKGRV HTSTASVIVL 240
  241 PQVSNDESSS LYDSSEVKIE VMRSRGAGGQ HVNRTESAVR LTHIPTGITV SMQDSRSQHQ 300
  301 NKEKAFLVLN SRLAALNAAK ENEAERLKRK NQVTSSDRSE KLRTYNFNQN RVTDHRIGLS 360
  361 MHDLSTFMQG EEKFDEFLEK IRIWNREQLL LHSEIV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..396] PSI-BLAST 125.0 Molecular basis for bacterial class 1 release factor methylation by PrmC

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • translation release factor activity
    		•  8.49824253851587 bayes_pls_golite062009
  • translation termination factor activity
    		•  8.4944923601206 bayes_pls_golite062009
  • translation regulator activity
    		•  5.08132283479856 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  5.06589285641735 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.35723700591238 bayes_pls_golite062009
  • binding
    		•  3.84101343221316 bayes_pls_golite062009
  • translation release factor activity, codon specific
    		•  0.183484956864194 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle