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Protein Overview: rpl1601

General Information:
Name(s) found: rpl1601 / SPBC839.13c [Sanger Pombe]
Description(s) found:
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  • pir||T40720 ribosomal protein L13/L16 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|6093875|sp|O42991.1|RL16B_SCHPO RecName: Full=60S ribosomal protein L16-B [NCBI NR]
  • gi|5441476|emb|CAB46706.1| 60S ribosomal protein L13/L16 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112045|ref|NP_595253.1| 60S ribosomal protein L13/L16 [Schizosaccharomyces pombe] [NCBI NR]
  • 60S ribosomal protein L13/L16 [Sanger Pombe]
  • 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1 [Swiss-Prot]
  • (O42991) 60S ribosomal protein L16-B [Swiss-Prot]
  • 60S RIBOSOMAL PROTEIN L13/L16: ;N0ACC; [pompepVF.fasta]
  • 60S ribosomal protein L16-B [pompep4896]
  • |rpl1601||60S ribosomal protein L13/L16 [pompepnew.fasta]
  • |rpl1601||60S ribosomal protein L13/L16|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • 60s ribosomal protein L13/L16 [Schizosaccharomyces pombe]gi|5441476|emb|CAB46706.1| rpl16-1 [Schizosaccharomyces pombe]gi|7493306|pir||T40720 ribosomal protein L13/L16 - fission yeast (Schizosaccharomyces pombe)gi|6093875|sp|O42991|R16B_SCHPO 60S ribo [nrdb_11152004_Chlamydomonas]
  • SPBC24E9.13c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • 60S ribosomal protein L13/L16 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |rpl1601||60S ribosomal protein L13/L16 |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1601 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 197 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    cytosolic large ribosomal subunit [ISSLink to PubMed article]
    Biological Process: translation [ISSLink to PubMed article]
    Molecular Function: structural constituent of ribosome [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFQKVVVI DAKGHLLGRL ASVVAKQLLG GQKVVVVRCE ELNISGHFFR NKLKYLAYLR  60
   61 KACRYNPSRG AFHFRAPSRI FQKAVRGMLP HKTARGQAAL EHLQAVEGIP PPFDKQKRVV 120
  121 VPAALRVLRL KPGRKYCTVG RLSSEVGWKY NDIVAKLEER RKVKSAAFYQ AKLAKQKKIA 180
  181 SAKEASPVNQ KLSQFGY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..197] PSI-BLAST 48.0 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle