YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl1601
Organism:	Schizosaccharomyces pombe
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl1601.

Description	E-value	Query Range	Subject Range
gi\|115389400, gi... - gi\|115389400\|ref\|XP_001212205.1\| serine palmitoyltransferase 2 [Aspergillus terreus NIH2624], gi\|114...	284.0	[0..2]	[197..693]
rpl1602 - 60S ribosomal protein L13 /L16 RL16A_SCHPO - 60S ribosomal protein L16-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1602 PE=1 S...	263.0	[0..1]	[197..1]
gi\|114678465 - gi\|114678465\|ref\|XP_001172778.1\| PREDICTED: similar to 23 kD highly basic protein isoform 6 [Pan tro...	260.0	[0..1]	[176..1]
gi\|3299816, gi\|1... - gi\|3299816\|dbj\|BAA31555.1\| ribosomal protein rp22 homolog [Schizosaccharomyces pombe], pir\|\|T43381 r...	256.0	[0..6]	[197..2]
RL13A_BOVIN - 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3	253.0	[0..1]	[197..1]
gi\|134025441, gi... - gi\|89272927\|emb\|CAJ83235.1\| ribosomal protein L13a [Xenopus tropicalis], gi\|62858175\|ref\|NP_00101648...	253.0	[0..3]	[196..30]
gi\|27697097, gi\|... - gi\|27697097\|gb\|AAH43976.1\| Rpl13a-prov protein [Xenopus laevis], gi\|148234180\|ref\|NP_001080130.1\| ri...	253.0	[0..4]	[196..31]
gi\|239744829, gi... - gi\|55662556\|emb\|CAH73036.1\| novel protein similar to ribosomal protein L13a RPL13A [Homo sapiens], g...	252.0	[0..1]	[196..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFQKVVVI DAKGHLLGRL ASVVAKQLLG GQKVVVVRCE ELNISGHFFR NKLKYLAYLR  60
   61 KACRYNPSRG AFHFRAPSRI FQKAVRGMLP HKTARGQAAL EHLQAVEGIP PPFDKQKRVV 120
  121 VPAALRVLRL KPGRKYCTVG RLSSEVGWKY NDIVAKLEER RKVKSAAFYQ AKLAKQKKIA 180
  181 SAKEASPVNQ KLSQFGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	1s1iM
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits