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Protein Overview: SPBC713.04c

General Information:
Name(s) found: SPBC713.04c [Sanger Pombe]
Description(s) found:
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  • gi|30580487|sp|Q9C1X1.1|PWP2_SCHPO RecName: Full=Periodic tryptophan protein 2 homolog [NCBI NR]
  • gi|19112135|ref|NP_595343.1| U3 snoRNP-associated protein Utp1 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|12311748|emb|CAC22605.1| U3 snoRNP-associated protein Utp1 [Schizosaccharomyces pombe] [NCBI NR]
  • U3 snoRNP-associated protein Utp1 [Sanger Pombe]
  • Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe GN=SPBC713.04c PE=1 SV=1 [Swiss-Prot]
  • WD REPEAT PROTEIN; POSSIBLY INVOLVED IN CYTOKINESIS; POSSIBLY INVOLVED IN ESTABLISHMENT OF CELL POLARITY; SIMILAR TO S. CEREVISIAE PWP2: Q9C1X1; [pompepVF.fasta]
  • WD REPEAT PROTEIN: Q9C1X1; [pompepV13]
  • Periodic tryptophan protein 2 homolog [pompep4896]
  • |||WD repeat protein [pompepnew.fasta]
  • |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • WD repeat protein [Schizosaccharomyces pombe]gi|12311748|emb|CAC22605.1| SPBC713.04c [Schizosaccharomyces pombe]gi|30580487|sp|Q9C1X1|PWP2_SCHPO Periodic tryptophan protein 2 homolog [nrdb_11152004_Chlamydomonas]
  • (Q9C1X1) Periodic tryptophan protein 2 homolog [pompep4896_normal_reversed]
  • |||U3 snoRNP-associated protein Utp1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • processome protein [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC713.04c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |||U3 snoRNP-associated protein Utp1 |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC713.04c PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 854 amino acids

    Gene Ontology:
    Cellular Component: small-subunit processome [IEA]
    cytosol [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: snoRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTEFGFSNL VGTIFSKGNL VFTPDGFSIL SPVGNRVSVY NLKDNTSYTF PFENHKNISH  60
   61 IALSPTSTLL LSVDEEGRCI LCNFLRRSVL HYFNFKSPVG AIEFSPNGKF FAVSLGKLIQ 120
  121 VWRTPNSLEE REFAPFVLHR EYTGHFDDIV SISWSADSRF FISTSKDLTA RLHSVDPIEG 180
  181 FHPCALTGHK NTVVSGFFSK DQQTIYTVSK DGALFVWKYS PLFQAGEVID EEAEENKTRT 240
  241 HIWLIKERHY FNQNSKLRCA AFHPTSNLLV VGFSSGLFGI YELPSFTMLY QLSITQSNID 300
  301 TLTVNSTGDW IAIGSSKLGQ LLVWEWQSES YVLKQQSHYD ALSTLQYSSD GQRIITGADD 360
  361 GKIKVWDMNS GFCIVTFTQH TSAVSGLCFS KRGNVLFSSS LDGSVRAWDL IRYRNFRTFT 420
  421 APSRVQFSCI AVDPSGEIVC AGSQDSFEIF MWSVQTGQLL ETLAGHEGPV SSLSFNSSGS 480
  481 LLASGSWDKT VRIWDIFSRS GIVEPLPIPS DVLSLAFHPD GKEVCVASLD GQLTFWNVQE 540
  541 GKQTSLIDGR KDLSGGRRFD DARTAENSSL NKTFTSICYS ADGSCVLSAG TSKYVCLYDI 600
  601 ITGVLIKKFQ LSKNESLQGV QEMLNSRKMT EAGSIELIDT QGEESDLEDR IDRTLPGARR 660
  661 GDLSARKTRP EIICHGVQFS PSGGAFAAAT TEGLMIYSLY NDFLFDPINL DMDITPSTTL 720
  721 TMCAEGEFLI SLVMALRLNE YKVVQKVYES IPITDVEHVV QELPVSYLAN FMGYLSSFAA 780
  781 ETPHIEFHLR WMKSVLTYHG EYLRRKNFEF ASQLTSLQKS IVVLSKRLSQ LSSNNEFQLS 840
  841 FLLDKMHLRL ENTA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..175] PSI-BLAST 44.522879 Cdc4 F-box and linker domains; Cdc4 propeller domain
    2 View Details [176..379] PSI-BLAST 63.221849 No description for 2ovpB was found.
    3 View Details [380..538] FFAS03 5.72 No description for 2gnqA was found.
    4 View Details [539..601] PSI-BLAST 55.221849 Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
    5 View Details [602..669] deduced N/A No confident structure predictions are available.
    6 View Details [670..854] Pfam 75.387216 No description for PF04047.5 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.69

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle