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Protein Overview: prp31

General Information:
Name(s) found: prp31 / SPBC119.13c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • U4/U6 x U5 tri-snRNP complex subunit Prp31 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 518 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    U4/U6 x U5 tri-snRNP complex [ISSLink to PubMed article]
    Biological Process: RNA splicing, via transesterification reactions [ISSLink to PubMed article]
    meiosis [RCALink to PubMed article]
    assembly of spliceosomal tri-snRNP [ISSLink to PubMed article]
    nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLADELLAD LDDIEETTES TITDELGPDA KKRRLELQLE EGNGISAELE NDLDITKISD  60
   61 SAQKLPSEVA NKFNDNNENI YQLLNSTRLR DIIEGTEKYK GTEKQAITGN IEDDLEYHLI 120
  121 VDSNSIAMEI DDEILRLHRL VKEWYHDRFP ELSSLVLNAF DYCKTVSSLL NDLDNSKTKL 180
  181 SFLPSATVMV IATTATTTVG KPLPDEMIKN VKNCCEAIQQ LGEEKQKIIE YVQSRISVVA 240
  241 PNLSAVVGST TAANLIGIAG GLTRLGKFPA CNLPALGKRR LTTIGINNPA VSGDYGFLYM 300
  301 SEIVQKTPPD VRKQAIRMTA AKVALAARID SIHEYPDGSF GISARKEVER KIEKLLEPPS 360
  361 QKPTVALPVP DDRPKRRRGG RRIRKMKEQY AVTELRRLQN RVAFGKEEAE VFNFDETEGL 420
  421 GMLGQEGEGK IRAVSIDSRT KLRLPKARKA QLQSMAQKNP LAASGLQSSL SFTPIQGIEL 480
  481 VNPLLQRQQK VEEANKWFRD GVFTQIKKDS NEPKNKFS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] MSA 2.124995 View MSA. No confident structure predictions are available.
    2 View Details [112..376] PSI-BLAST 84.69897 No description for 2ozbB was found.
    3 View Details [377..518] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
    		• 7.49125847856109 bayes_pls_golite062009
  • RNA binding
    		•  3.2756923991225 bayes_pls_golite062009
  • binding
    		•  1.79978015066238 bayes_pls_golite062009
  • snoRNA binding
    		•  1.52707271561647 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.16675709303653 bayes_pls_golite062009
  • protein binding
    		•  0.677845731709912 bayes_pls_golite062009
  • catalytic activity
    		•  0.115416547010168 bayes_pls_golite062009
  • snoRNP binding
    		•  0.0745425288077295 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle