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Protein Overview: pof9

General Information:
Name(s) found: pof9 / SPBC3H7.06c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • F-box protein Paf9 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 467 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    ubiquitin ligase complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: protein binding [IPILink to PubMed article]
    protein binding, bridging [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSPFLELS YDILLEISTY LDYKDIVHLS ETCKSLSYVF DDKTIWHRFC ARVQGLTNVV  60
   61 PVVDDNYKRP YAVWKDRGYA YSWGQQIRNY LGRVVNTNQY PRDRPGALTG KDVRSTIQVQ 120
  121 VGGYGMYLLN ENGNLYVTGV PNNVGPELMR DLEPIVKIHA GREFCLALGE TGHLYQVSLK 180
  181 TRICLTDEQN MLSAYRGRIA NFKSGWDSHS AYVPGIGFLV WHTGRESEAQ LFQPEASMKE 240
  241 FVLNDYVHCA GFLVYTVASP QKKGAVFRLD LDQATQHTLG RELKRFASHD PHQGWHLAGS 300
  301 FETFTCLSDD GNTVYMGHAN TKQVDDDPVI HDFLQNRGIK QLAHGDHHHL YLTSDHSIWS 360
  361 WGVELRYCGC LGLGSLHLQE QTSDPSIVSD PRTARNIVSI PHQIHFSGTC YSVAAGGWQS 420
  421 AALAISESVL PEVNVPPITT FSIIRPSRVP ALRFLAAPAT RTLERDG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..467] PSI-BLAST 61.69897 Regulator of chromosome condensation RCC1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  0.970497409952391 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.968973276416404 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.79389712729474 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.659968164974572 bayes_pls_golite062009
  • ligase activity
    		•  0.600903970798223 bayes_pls_golite062009
  • binding
    		•  0.569157611496849 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle