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Protein Overview: pds5

General Information:
Name(s) found: pds5 / SPAC110.02 [Sanger Pombe]
Description(s) found:
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  • gi|31076847|sp|Q9HFF5.1|PDS5_SCHPO RecName: Full=Sister chromatid cohesion protein pds5; AltName: Full=Precocious dissociation of sisters protein 5 [NCBI NR]
  • gi|19114447|ref|NP_593535.1| cohesin-associated protein Pds5 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|16751524|dbj|BAB71784.1| Pds5 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|10185125|emb|CAC08560.1| cohesin-associated protein Pds5 [Schizosaccharomyces pombe] [NCBI NR]
  • cohesin-associated protein Pds5 [Sanger Pombe]
  • Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe GN=pds5 PE=1 SV=1 [Swiss-Prot]
  • INVOLVED IN SISTER CHROMATID COHESION; SIMILAR TO S. CEREVISIAE PDS5: Q9HFF5; [pompepVF.fasta]
  • PROTEIN WITH POSSIBLE ROLE IN CHROMATID COHESION AND CHROMOSOME CONDENSATION; BY SIMILARITY TO YEAST PDS5: Q9HFF5; [pompepV13]
  • Sister chromatid cohesion protein pds5 (Precocious dissociation of sisters protein 5) [pompep4896]
  • |pds5||Cohesin-associated protein (PMID 11598020) [pompepnew.fasta]
  • |pds5||cohesin-associated protein (PMID 11598020)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • Protein with possible role in chromosome dynamics by similarity to yeast pds5 [Schizosaccharomyces pombe]gi|10185125|emb|CAC08560.1| SPAC110.02 [Schizosaccharomyces pombe]gi|31076847|sp|Q9HFF5|PDS5_SCHPO Sister chromatid cohesion protein pds5 (Precociou [nrdb_11152004_Chlamydomonas]
  • |pds5||cohesin-associated protein |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q9HFF5) Sister chromatid cohesion protein pds5 (Precocious dissociation of sisters protein 5) [pompep4896_normal_reversed]
  • |pds5||cohesin-associated protein Pds5|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • Pds5 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC110.02 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC110.02 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pds5 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 1205 amino acids

    Gene Ontology:
    Cellular Component: mitotic cohesin complex [IGILink to PubMed article]
    chromosome, centromeric region [IEA]
    condensed nuclear chromosome [ICLink to PubMed article]
    Biological Process: attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation [IMPLink to PubMed article]
    sister chromatid cohesion [IGILink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    response to DNA damage stimulus [IMPLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKLQFQRNI VPTHDNPLTT SEILKRLRDL LGELTSLSQD TIDRDSVLPV ARSLVNNNLL  60
   61 HHKDKGIRSY TLCCIVELLR LCAPDAPFTL SQLEDIFQVI LKILSGLMNQ ESTYYPQIYE 120
  121 ILESLSNVKS AVLIVDLPNA EEFLVNIFRL FFDLARKGTT KNVEFYMLDI INQLINEINT 180
  181 IPAAALNILF AQLISGKGVR QTIGSSDSTN HGPAFQLARN IFHDSADRLQ RYVCQYFSDI 240
  241 IFDSRDSLSD SMTTPEFIFS HNLVLQLWKY APTTLLNIIP QFENELQAEQ TSVRLVAIET 300
  301 VGLMLQDNAI WSDYPRVWSA FCGRLNDKSV ACRIKCIEVA SNALQNSLAT SEIIENVVQM 360
  361 LQSKLADTDE KVRVATLKTI EQLTFETFKM QFSVQALKLM GDRLRDRKLN VRLQAIRTLS 420
  421 QIYNRAYQDL IDGVEYSIQM FSWIPSSLLE VFYVNDETTN AAVEICMAEL VLQYLSSDTQ 480
  481 TRLNRLFLSI KYFSEKAMRV FILLLQRQVK YSELLNYYIE CCKNYNGGVM DNDEESITNK 540
  541 LKKVIDIISS KSSNPTLTEA TFRKFAELND RQSYKMLLQT FSIKSEYQVV LKSIKYLFKR 600
  601 VSETLSTASL ECFRIFVYRS ALFAFNKSNV HEIIQLLNEP VKYHNFLKPS EALLQHLPLI 660
  661 HPNIYGEVVI EVENIIVSSG IESDPKVIKA LSQFSKRKKN FSIQTTTAEI LRKLCLHGTQ 720
  721 EQAKQAATII AITETKEFKL DMITNIVENL EYNGGLPVRL MTLGQLFLYT LEEVEKVADQ 780
  781 VTEFLVKKVI QRFPEKYDDT HNDEEWCTYE KLDNLTMCKV LAIRVLVNRL RAAAGGTEAL 840
  841 NIGAPIIKLL KVLLMADGEL SPFKNTPKIS RAYLRLTASK YFLKLCSIPF YAEHIDFSSY 900
  901 VQISLLCQDE NFDVRNLFLT KLQKQLQLKK LPISYYPLLF LTAVDPEEEI KTKASIWIRS 960
  961 QVAFFQKTHD FTMEYVATYL IHLLSHHPDI SSIESENSLD FIAYIRFYVD TVVNSENVPI1020
 1021 VFHLMQRIKQ SYDVIEDGNN YIYVLSDMAQ KILQVKSQNF GWSLTTYPKQ IKLPYEILRP1080
 1081 IPSIDEKKRI FNKIFITPKM ESQIEHAIRT PVSSFAKQTT NKHANLKQKK THSSKSDKKS1140
 1141 SRRRKNEKRR KLNEQNPNIR NVPERSSSRF QGIRINYSEA PSSSEEISEE EEEISEEDFD1200
 1201 EIEDL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ste13 No Comments Unpublished Data

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..60] PSI-BLAST 67.154902 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    2 View Details [61..532] PSI-BLAST 28.69897 Crystal Structure of The Cand1-Cul1-Roc1 Complex
    3 View Details [533..688] PSI-BLAST 19.0 Structure of the Kap60p:Nup2 complex
    4 View Details [689..811] PSI-BLAST 76.69897 AP1 clathrin adaptor core
    5 View Details [812..908] deduced N/A No confident structure predictions are available.
    6 View Details [909..1090] MSA 2.059949 View MSA. No confident structure predictions are available.
    7 View Details [1091..1205] MSA 3.044988 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle