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Protein Overview: isp7

General Information:
Name(s) found: isp7 / SPAC25B8.13c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • 2-OG-Fe(II) oxygenase superfamily protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 397 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: induction of conjugation upon nitrogen starvation [IEPLink to PubMed article]
    Molecular Function: iron ion binding [IEA]
    oxidoreductase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSQLIERST QYVREASLEE QNRIMPLIDF GPYVNQEPGA HERIIQQLRA ACESTGFFQI  60
   61 VNSPISPDVV KNAFRASKQF FELPFDEKLT LSKDMFSNRG YELMEDFVLE GEEDSSSPLE 120
  121 ISGIDFEAGS YPGEAPLPPS SIGYVLPPSS LANGEGSSMF DADMTTSNAV AHGDESISNE 180
  181 FRESFYFGND NLSKDRLLRP FQGPNKWPST AGSSFRKALV KYHDQMLAFA NHVMSLLAES 240
  241 LELSPDAFDE FCSDPTTSIR LLRYPSSPNR LGVQEHTDAD ALTLMSQDNV KGLEILDPVS 300
  301 NCFLSVSPAP GALIANLGDI MAILTNNRYK SSMHRVCNNS GSDRYTIPFF LQGNIDYVVA 360
  361 PLPGLGPSTA EPIAVEDLLR DHFQNSYTSH TTSLEVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..397] PSI-BLAST 62.522879 No description for 2brtA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • damaged DNA binding
    		•  2.16645246370817 bayes_pls_golite062009
  • oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
    		•  2.13037944896112 bayes_pls_golite062009
  • binding
    		•  1.98106807488954 bayes_pls_golite062009
  • oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
    		•  1.96457406152694 bayes_pls_golite062009
  • protein binding
    		•  1.3509867822299 bayes_pls_golite062009
  • DNA binding
    		•  0.925956951210095 bayes_pls_golite062009
  • catalytic activity
    		•  0.921320409505 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.778311364997835 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle