YRC Public Data Repository - Protein Structure Prediction

Protein:	isp7
Organism:	Schizosaccharomyces pombe
Length:	397 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for isp7.

Description	E-value	Query Range	Subject Range
gi\|67462129 - gi\|67462129\|gb\|AAY67841.1\| gibberellin 20-oxidase 1 [Lolium perenne]	281.0	[0..1]	[396..10]
gi\|99032729, gi\|... - gi\|99032731\|gb\|ABF61826.1\| gibberellin 20-oxidase [Vitis vinifera], gi\|99032729\|gb\|ABF61825.1\| gibbe...	280.0	[0..1]	[396..33]
gi\|4164141 - gi\|4164141\|dbj\|BAA37127.1\| gibberelin 20-oxidase [Lactuca sativa]	278.0	[0..1]	[395..34]
gi\|46850208, gi\|... - gi\|46850208\|gb\|AAT02537.1\| gibberellin 20-oxidase [Populus tomentosa], gi\|40233167\|gb\|AAR83346.1\| gi...	277.0	[0..1]	[396..38]
gi\|49065946 - gi\|49065946\|gb\|AAT49058.1\| GA 20-oxidase 1 [Hordeum vulgare subsp. vulgare]	276.0	[0..1]	[396..10]
gi\|53139608 - gi\|53139608\|emb\|CAH59112.1\| gibberellin 20-oxidase [Populus tremula]	276.0	[0..1]	[397..38]
gi\|34013370, gi\|... - gi\|34013372\|dbj\|BAC82103.1\| gibberellin 20-oxidase [Populus alba], gi\|34013370\|dbj\|BAC82102.1\| gibbe...	275.0	[0..1]	[396..38]

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Predicted Domain #1

Region A:
Residues: [1-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSQLIERST QYVREASLEE QNRIMPLIDF GPYVNQEPGA HERIIQQLRA ACESTGFFQI  60
   61 VNSPISPDVV KNAFRASKQF FELPFDEKLT LSKDMFSNRG YELMEDFVLE GEEDSSSPLE 120
  121 ISGIDFEAGS YPGEAPLPPS SIGYVLPPSS LANGEGSSMF DADMTTSNAV AHGDESISNE 180
  181 FRESFYFGND NLSKDRLLRP FQGPNKWPST AGSSFRKALV KYHDQMLAFA NHVMSLLAES 240
  241 LELSPDAFDE FCSDPTTSIR LLRYPSSPNR LGVQEHTDAD ALTLMSQDNV KGLEILDPVS 300
  301 NCFLSVSPAP GALIANLGDI MAILTNNRYK SSMHRVCNNS GSDRYTIPFF LQGNIDYVVA 360
  361 PLPGLGPSTA EPIAVEDLLR DHFQNSYTSH TTSLEVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.522879
Match:	2brtA
Description:	No description for 2brtA was found.

Predicted functions:

Term	Confidence	Notes
damaged DNA binding	2.16645246370817	bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.13037944896112	bayes_pls_golite062009
binding	1.98106807488954	bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.96457406152694	bayes_pls_golite062009
protein binding	1.3509867822299	bayes_pls_golite062009
DNA binding	0.925956951210095	bayes_pls_golite062009
catalytic activity	0.921320409505	bayes_pls_golite062009
nucleic acid binding	0.778311364997835	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: