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Protein Overview: gar2

General Information:
Name(s) found: gar2 / SPAC140.02 [Sanger Pombe]
Description(s) found:
Found 15 descriptions.
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  • GAR family [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 500 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDALink to PubMed articleLink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: nucleolus organization [IMPLink to PubMed article]
    ribosome biogenesis [IMPLink to PubMed article]
    rRNA processing [IMPLink to PubMed article]
    Molecular Function: RNA binding [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKDKTSVK KSVKETASKK GAIEKPSKSK KITKEAAKEI AKQSSKTDVS PKKSKKEAKR  60
   61 ASSPEPSKKS VKKQKKSKKK EESSSESESE SSSSESESSS SESESSSSES ESSSSESSSS 120
  121 ESEEEVIVKT EEKKESSSES SSSSESEEEE EAVVKIEEKK ESSSDSSSES SSSESESESS 180
  181 SSESEEEEEV VEKTEEKKEG SSESSSDSES SSDSSSESGD SDSSSDSESE SSSEDEKKRK 240
  241 AEPASEERPA KITKPSQDSN ETCTVFVGRL SWNVDDQWLG QEFEEYGTIV GARVIMDGQS 300
  301 GRSKGYGYVD FETPEAAKAA VAANGTKEID GRMVNLDLSN PRPANPQPYA QQRAGNFGDQ 360
  361 LSEPSDTVFV GNLSFNATED DLSTAFGGCG DIQSIRLPTD PQSGRLKGFG YVTFSDIDSA 420
  421 KKCVEMNGHF IAGRPCRLDF STPRTGGGSR GGRGGFGGRG GFGGRGGFGG GRGRGRGGAR 480
  481 SGNPNRGSVA PFSGNKVTFD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] MSA 2.201997 View MSA. No confident structure predictions are available.
    2 View Details [120..257] FFAS03 1.04 No description for 2j63A was found.
    3 View Details [258..500] PSI-BLAST 36.522879 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle