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Protein Overview: gar1

General Information:
Name(s) found: gar1 / SPBC20F10.01 [Sanger Pombe]
Description(s) found:
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  • gi|544370|sp|Q06975.1|GAR1_SCHPO RecName: Full=H/ACA ribonucleoprotein complex subunit 1; AltName: Full=snoRNP protein GAR1 [NCBI NR]
  • pir||S33691 GAR1 protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|297009|emb|CAA79628.1| snoRNP protein GAR1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|2842463|emb|CAA16841.1| SPBC20F10.01 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|2104450|emb|CAB08787.1| snoRNP pseudouridylase complex protein Gar1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113157|ref|NP_596365.1| snoRNP pseudouridylase complex protein Gar1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|1799516|dbj|BAA19143.1| snoRNP protein GAR 1 [Schizosaccharomyces pombe] [NCBI NR]
  • snoRNP pseudouridylase complex protein Gar1 [Sanger Pombe]
  • H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces pombe GN=gar1 PE=2 SV=1 [Swiss-Prot]
  • PRE-MRNA PROCESSING PROTEIN GAR1P GAR1 PROTEIN; SMALL NUCLEOLAR RNP REQUIRED FOR PRE-MRNA PROCESSING: Q06975; [pompepVF.fasta]
  • snoRNP protein gar1 [pompep4896]
  • |gar1|SPBC25H2.01c|snoRNP (small nucleolar ribonucleoprotein-associated protein) (PMID 8502556) [pompepnew.fasta]
  • Small nucleolar RNP protein gar1 (snoRNP protein gar1) [4896.FASTAC]
  • |gar1|SPBC25H2.01c|ribonucleoprotein (RNP) complex (PMID 8502556)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • |gar1|SPBC25H2.01c|ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • ribonucleoprotein (RNP) complex (PMID 8502556); small nuclear ribonucleoprotein (snRNP); involved in rRNA processing (required) (PMID 7596817); localization nucleolus (PMID 7596817); RNA-binding protein; similar to S. cerevisiae YHR089C [Schizosaccharomyc [nrdb_11152004_Chlamydomonas]
  • (Q06975) snoRNP protein gar1 [pompep4896_normal_reversed]
  • |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex protein Gar1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC20F10.01 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • snoRNP protein GAR 1 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • snoRNP protein GAR1 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • SPBC20F10.01 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • H/ACA ribonucleoprotein complex subunit 1 (snoRNP protein GAR1) [nr-271106-contam.fasta]
  • |gar1|SPBC25H2.01c|snoRNP pseudouridylase box H/ACA snoRNP complex protein Gar1|Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gar1 PE=2 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 194 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    small nucleolar ribonucleoprotein complex [IGILink to PubMed article]
    Biological Process: rRNA modification [IGILink to PubMed article]
    rRNA processing [IGILink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    rRNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRGGRGGG FRGGRGGSRP FTPSGPPDQV IELGLFMHDC EGEMVCQSTN VKIPYFNAPI  60
   61 YLENKSQIGK IDEVFGPMNQ VYFTVKPSEG IVSSSFKVGD KVYLSGDKLI PLDRFLPKPK 120
  121 TVGPKKPKGA RNGPAGRGGR GGFRGGRGGS RGGFGGNSRG GFGGGSRGGF GGGSRGGSRG 180
  181 GFRGGSRGGF RGRF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] FFAS03 3.88 No description for 2v3mA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle