YRC Public Data Repository - Protein Structure Prediction

Protein:	gar1
Organism:	Schizosaccharomyces pombe
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gar1.

Description	E-value	Query Range	Subject Range
gi\|28924025, gi\|... - gi\|32416262\|ref\|XP_328609.1\| hypothetical protein [Neurospora crassa], gi\|28924025\|gb\|EAA33183.1\| pr... gi\|85107679 - gi\|85107679\|ref\|XP_962419.1\| hypothetical protein NCU07903 [Neurospora crassa OR74A]	191.0	[0..22]	[130..287]
GAR1_KLULA - H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis GN=GAR1 PE=3 SV=1 GAR1_KLULA - H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM...	190.0	[0..14]	[133..19]
gi\|56566042 - gi\|56566042\|gb\|AAV98357.1\| nucleolar protein family A member 1 [Homo sapiens]	189.0	[0..19]	[123..59]
GAR1_YEAST - H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... gi\|151944037 - gi\|151944037\|gb\|EDN62330.1\| small nucleolar RNP protein [Saccharomyces cerevisiae YJM789] GAR1 - Protein component of the H/ACA snoRNP pseudouridylase complex, involved in the modification and clea...	189.0	[0..20]	[142..27]
GAR1_CANGA - H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata GN=GAR1 PE=3 SV=1 GAR1_CANGA - H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761...	188.0	[0..23]	[137..31]
GAR1_ASHGO - H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii GN=GAR1 PE=3 SV=1 GAR1_ASHGO - H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC ...	188.0	[0..26]	[130..34]
GAR1_MOUSE - H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1 PE=1 SV=1	188.0	[0..19]	[126..70]
GAR1_RAT - H/ACA ribonucleoprotein complex subunit 1 OS=Rattus norvegicus GN=Gar1 PE=2 SV=1	188.0	[0..20]	[126..62]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRGGRGGG FRGGRGGSRP FTPSGPPDQV IELGLFMHDC EGEMVCQSTN VKIPYFNAPI  60
   61 YLENKSQIGK IDEVFGPMNQ VYFTVKPSEG IVSSSFKVGD KVYLSGDKLI PLDRFLPKPK 120
  121 TVGPKKPKGA RNGPAGRGGR GGFRGGRGGS RGGFGGNSRG GFGGGSRGGF GGGSRGGSRG 180
  181 GFRGGSRGGF RGRF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.88
Match:	2v3mA
Description:	No description for 2v3mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits