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Protein Overview: fmt1

General Information:
Name(s) found: fmt1 / SPAC1805.09c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • methionyl-tRNA formyltransferase Fmt1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 340 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    mitochondrion [ISSLink to PubMed article]
    Biological Process: methionyl-tRNA aminoacylation [ISSLink to PubMed article]
    mitochondrial translation [RCALink to PubMed article]
    translational initiation [ISSLink to PubMed article]
    Molecular Function: methionyl-tRNA formyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKIPLNVI FLGTDEFSIP ILRKLIGCVQ RVRVVSAGGK RQSRRGEIPL PPAAMEANAN  60
   61 GLEYIKLQDG WKNFHMRPDD QLAITASFGR FVPFKILNQL PYGGINIHPS LLPKYRGAGP 120
  121 VYSTILNGDR LAGVTIQTMD SKQFDKGKSL AQAYLKLNGK ETYTLLTKIL SLGAAGMLEH 180
  181 VLLQSLYLPN CQTNTVAPQI HGRITDTGGL QLISKETFPS FQESWAKKIT PEDAHVNFES 240
  241 MNTQQIYNMS RAFNHVWCIL NNKKVFLYDV HPLHSTSAED WIHMKPGEFA LLEKNLLLVK 300
  301 TLDHVMVIKG GIRLSARKIV DPVEWGKTFN SGRGGRFQYV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..340] PSI-BLAST 84.154902 Methionyl-tRNAfmet formyltransferase, C-terminal domain; Methionyl-tRNAfmet formyltransferase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • methionyl-tRNA formyltransferase activity
    		•  5.51013755462273 bayes_pls_golite062009
  • hydroxymethyl-, formyl- and related transferase activity
    		•  5.19882604023997 bayes_pls_golite062009
  • ligase activity
    		•  2.41579019065074 bayes_pls_golite062009
  • methyltransferase activity
    		•  2.27572765999587 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  2.20102068445328 bayes_pls_golite062009
  • catalytic activity
    		•  2.16003793103722 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  1.99841214906509 bayes_pls_golite062009
  • transferase activity
    		•  1.01502594768782 bayes_pls_golite062009
  • DNA N-glycosylase activity
    		•  0.809924940479886 bayes_pls_golite062009
  • binding
    		•  0.752059276178195 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.698214709916015 bayes_pls_golite062009
  • DNA binding
    		•  0.421388681127685 bayes_pls_golite062009
  • phosphoribosylglycinamide formyltransferase activity
    		•  0.0567687847434473 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing N-glycosyl compounds
    		•  0.0124799003650303 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle