YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: tef5

General Information:
Name(s) found: tef5 / SPCC1450.04 [Sanger Pombe]
Description(s) found:
SHOW ONLY BEST
  • pir||T40986 translation elongation factor eEF-1 beta chain - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|4581514|emb|CAB40171.1| translation elongation factor EF-1 beta subunit (eEF1B) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|3309002|dbj|BAA31571.1| elongation factor 1 beta [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19075803|ref|NP_588303.1| translation elongation factor EF-1 beta subunit [Schizosaccharomyces pombe] [NCBI NR]
  • gi|13124182|sp|O74173.1|EF1B_SCHPO RecName: Full=Elongation factor 1-beta; Short=EF-1-beta [NCBI NR]
  • translation elongation factor EF-1 beta subunit [Sanger Pombe]
  • Elongation factor 1-beta OS=Schizosaccharomyces pombe GN=tef5 PE=2 SV=1 [Swiss-Prot]
  • ELONGATION FACTOR 1 BETA: O74173;Q10249; [pompepVF.fasta]
  • Elongation factor 1-beta (EF-1-beta) [pompep4896]
  • |tef5||elongation factor 1 beta [pompepnew.fasta]
  • |tef5||translation elongation factor 1 (beta subunit) (PMID 9099890)|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • elongation factor 1 beta [Schizosaccharomyces pombe]gi|4581514|emb|CAB40171.1| SPCC1450.04 [Schizosaccharomyces pombe]gi|13124182|sp|O74173|EF1B_SCHPO Elongation factor 1-beta (EF-1-beta)gi|7490527|pir||T40986 translation elongation factor eEF-1 beta c [nrdb_11152004_Chlamydomonas]
  • |tef5||translation elongation factor 1 |Schizosaccharomyces pombe|chr 3|||Manual [pompep2242005.fasta]
  • (O74173) Elongation factor 1-beta (EF-1-beta) [pompep4896_normal_reversed]
  • |tef5||translation elongation factor EF-1 beta subunit |Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • elongation factor 1 beta [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPCC1450.04 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPCC1450.04 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Elongation factor 1-beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tef5 PE=2 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 214 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    eukaryotic translation elongation factor 1 complex [ISSLink to PubMed article]
    Biological Process: translational elongation [ISSLink to PubMed article]
    positive regulation of translational elongation [ICLink to PubMed article]
    Molecular Function: translation elongation factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFSDLTSDA GLKQLNDFLL DKSFIEGYEP SQADAVVFKA VGVAPDTAKY PNGARWYKQI  60
   61 ATYDLATLPG TAKEVSAYGP EGAAAAEEDE IDLFGSDEEE DPEAERIKAE RVAEYNKKKA 120
  121 AKPKAVHKSL VTLDVKPWDD ETPMDELEKA VRSIQMDGLV WGLSKLVPVG FGVNKFQINL 180
  181 VVEDDKVSLE ALQEELEGFE DYVQSTDIAA MSKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] PSI-BLAST 11.69897 Class delta GST
    2 View Details [81..214] PSI-BLAST 38.09691 SOLUTION STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE FACTOR DOMAIN FROM HUMAN ELONGATION FACTOR-ONE BETA, NMR, 20 STRUCTURES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.25677962636026 bayes_pls_golite062009
  • transferase activity
    		•  1.05573069897577 bayes_pls_golite062009
  • catalytic activity
    		•  0.963623964325467 bayes_pls_golite062009
  • protein binding
    		•  0.509172505892898 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.46030380837916 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  0.44372379417457 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.385619646192102 bayes_pls_golite062009
  • RNA binding
    		•  0.382017633056715 bayes_pls_golite062009
  • glutathione transferase activity
    		•  0.20688408808374 bayes_pls_golite062009
  • receptor binding
    		•  0.195270520302129 bayes_pls_golite062009
  • DNA binding
    		•  0.175092771820973 bayes_pls_golite062009
    2
    Term Confidence Notes
  • translation elongation factor activity
    		•  12.3173391557088 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  7.81664120156021 bayes_pls_golite062009
  • translation regulator activity
    		•  7.77673515271111 bayes_pls_golite062009
  • binding
    		•  2.63855036019658 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.61354904861592 bayes_pls_golite062009
  • actin binding
    		•  1.90340345597574 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.63487486759233 bayes_pls_golite062009
  • signal transducer activity
    		•  0.663610041920356 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.663610041920356 bayes_pls_golite062009
  • protein binding
    		•  0.590516949627746 bayes_pls_golite062009
  • actin monomer binding
    		•  0.2298282502586 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle