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Protein Overview: SPAC29A4.04c

General Information:
Name(s) found: SPAC29A4.04c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • pseudouridylate synthase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 474 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    nucleolus [IEA]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: rRNA modification [ISSLink to PubMed article]
    pseudouridine synthesis [IEA]
    tRNA metabolic process [RCALink to PubMed article]
    rRNA processing [ISSLink to PubMed article]
    Molecular Function: RNA binding [IEA]
    pseudouridine synthase activity [IEA]
    pseudouridylate synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTHPGVDF MIKPEATSAS KIDTAEWPLL LKNFDKLLVR TGHYTPIPCG NNPLKRPIAE  60
   61 YVSSGVINLD KPANPSSHEV VAWVKKILRV EKTGHSGTLD PKVTGCLIIC NDRATRLVKS 120
  121 QQSAGKEYVC VLRLHDSVEG ERNVASAIET LTGALFQRPP LISAVKRQLR IRSIYESKLI 180
  181 EFDNERNLAV FWASCEAGTY MRTLCVHLGL LLGVGGHMQE LRRVRSGCLS ENDDIVTMHD 240
  241 VLDAQWIYDN TRDESYLRRV IRPLESLLVG YKRIVVKDSA VNAICYGAKL MIPGLLRYEA 300
  301 GIEVNEEIVL ITTKGEAIAV GIAQMSTVEL STCDHGVVAK VKRCIMERDV YPRRWGLGPQ 360
  361 SMKKKTLKKE GKLDKYGRPN ENTPADWSKS YIDYSDPNAE VAKPAPVVAP AAPTVEAEVN 420
  421 GVEDSKKRKS VESSEKDEDE AAKKEEKRRK KEAKKEKKEK KEKKEKKEKK KKSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..356] PSI-BLAST 105.0 No description for 2hvyA was found.
    2 View Details [357..474] MSA 3.044994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.60483019625575 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  4.62815459483632 bayes_pls_golite062009
  • isomerase activity
    		•  3.43067391737824 bayes_pls_golite062009
  • catalytic activity
    		•  2.39224964671205 bayes_pls_golite062009
  • ligase activity
    		•  0.636073507077293 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle