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Protein Overview: brx1

General Information:
Name(s) found: brx1 / SPBC800.06 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • ribosome biogenesis protein Brx1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 295 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cell division site [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: ribosome biogenesis [ISSLink to PubMed article]
    rRNA processing [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVYKLKTS ERAPKNEDED EEYVPVQNGQ GNKHSAGFVP IKQKVLVLSS RGVTYRQRHL  60
   61 LNDLVSMMPH SKKDSKLDSK DRLYQLNELA ELYNCNNIFF FESRRREDLY LHIARAPNGP 120
  121 TVKFHVENLH TMDELNMTGN ALKGSRPILS FDKTFDTAPH LKVVKELLQQ TFGIPKGARR 180
  181 SKPFIDRVCT LTIADGKIWF RNYEIRENED KSKDPVTLIE IGPRFVMTII NILEGSFGGP 240
  241 VIYKNDTFVS STMVRAAIRN QAAQRYVNRQ ESKLERQVRA QQNVIPEDPL DNVFA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] PSI-BLAST 13.045757 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
    2 View Details [137..295] FFAS03 1.67 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • aminoacyl-tRNA ligase activity
    		•  3.87211694771248 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  3.87184649959884 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  3.87184649959884 bayes_pls_golite062009
  • ligase activity
    		•  2.64230127203047 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  2.35871952544841 bayes_pls_golite062009
  • binding
    		•  1.78917266819015 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009
  • protein binding
    		•  0.665778090365515 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle