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Protein Overview: pen-PA

General Information:
Name(s) found: pen-PA / FBpp0076918 [FlyBase]
Description(s) found:
Found 27 descriptions.
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  • The gene penguin is referred to in FlyBase by the symbol Dmel\pen (CG1685, FBgn0015527). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:21217530..21220866. It has the cytological map location 19F5. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: RNA binding. There is experimental evidence that it is involved in the biological process</span>: apposition of dorsal and ventral imaginal disc-derived wing surfaces. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 737 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: apposition of dorsal and ventral imaginal disc-derived wing surfaces [IMP]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSEPKGPA NVANTASPLK AHESSGKRAN GQKFKPGGAG GARKFDKFGG GAGKSFVKPG  60
   61 AGGAKKFDKS GPGGFKKFDK SGATGDKRLG GNKFRGKPQT QPQAPAEGEK QDWNKFKKEK 120
  121 KDLKLKRKSA KDTYEISKEA NQIHEKLRCR RTENKDKLVE QIYKVLNVGD TISKVVKAHD 180
  181 TARVIQSMLK YASPALRAEI SEKLLPFTVE MCQSKYAQFC VQRMLKYGAP ATKAKLVDSL 240
  241 YGHIVRLAGH SIGSGLLDSM YQSATPNQRI YMRQEFYGDL YRKAKDSNVK TLSDTYKEAT 300
  301 NMKASILGSV KANLDHVANK QLVDSALVHA VMLEYLRACD EDEEKLEETV TAFAALVPHM 360
  361 LSTKEGSEAA VICFYKSTPK NRRAIIKNIK EHLLKIANHE HGHVFLISLL NALDDTKATK 420
  421 KAIYDHLHGD LKALMSSPYG RRVIQWLVAP GDTTCFHPEF IRTVEEGLAF GKKEKELRRK 480
  481 EILEQIEAPI AQSIAEDAAF WLSNSHIGLV TGDILNHIQG ESYEKAASAL AQVVVQPEWR 540
  541 ISADAAGPQP QDKKKPHNDV EAIIAQATKQ RRKLLYVESS SDDEDEDEDE DEESDDEGDE 600
  601 KEQKEAAADD AEPKVKKAKK EPKKPKAKEE EPAAPLVSGI EEAGMHIVLK KILKNDGKRE 660
  661 GTPFSQQLLQ NLSSDVLKAW LGVNRACFVL LKLVEECPAL LDDCKKAIAA ERSLSQILAD 720
  721 RKTPGAKLLA AKLDIGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] MSA 1.184995 View MSA. No confident structure predictions are available.
    2 View Details [102..473] PSI-BLAST 94.39794 Pumilio 1
    3 View Details [474..631] deduced N/A No confident structure predictions are available.
    4 View Details [632..737] MSA 1.044989 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.72866289380549 bayes_pls_golite062009
  • protein binding
    		•  1.50424196360192 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle