| Protein: | pen-PA |
| Organism: | Drosophila melanogaster |
| Length: | 737 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pen-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
430.0 | [0..7] | [482..696] |
|
Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MVSSEPKGPA NVANTASPLK AHESSGKRAN GQKFKPGGAG GARKFDKFGG GAGKSFVKPG 60
61 AGGAKKFDKS GPGGFKKFDK SGATGDKRLG GNKFRGKPQT Q
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [102-473] |
1 11 21 31 41 51
| | | | | |
1 PQAPAEGEKQ DWNKFKKEKK DLKLKRKSAK DTYEISKEAN QIHEKLRCRR TENKDKLVEQ 60
61 IYKVLNVGDT ISKVVKAHDT ARVIQSMLKY ASPALRAEIS EKLLPFTVEM CQSKYAQFCV 120
121 QRMLKYGAPA TKAKLVDSLY GHIVRLAGHS IGSGLLDSMY QSATPNQRIY MRQEFYGDLY 180
181 RKAKDSNVKT LSDTYKEATN MKASILGSVK ANLDHVANKQ LVDSALVHAV MLEYLRACDE 240
241 DEEKLEETVT AFAALVPHML STKEGSEAAV ICFYKSTPKN RRAIIKNIKE HLLKIANHEH 300
301 GHVFLISLLN ALDDTKATKK AIYDHLHGDL KALMSSPYGR RVIQWLVAPG DTTCFHPEFI 360
361 RTVEEGLAFG KK
|
| Detection Method: | |
| Confidence: | 94.39794 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.72866289380549 | bayes_pls_golite062009 |
| protein binding | 1.50424196360192 | bayes_pls_golite062009 |
|
Region A: Residues: [474-631] |
1 11 21 31 41 51
| | | | | |
1 EKELRRKEIL EQIEAPIAQS IAEDAAFWLS NSHIGLVTGD ILNHIQGESY EKAASALAQV 60
61 VVQPEWRISA DAAGPQPQDK KKPHNDVEAI IAQATKQRRK LLYVESSSDD EDEDEDEDEE 120
121 SDDEGDEKEQ KEAAADDAEP KVKKAKKEPK KPKAKEEE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [632-737] |
1 11 21 31 41 51
| | | | | |
1 PAAPLVSGIE EAGMHIVLKK ILKNDGKREG TPFSQQLLQN LSSDVLKAWL GVNRACFVLL 60
61 KLVEECPALL DDCKKAIAAE RSLSQILADR KTPGAKLLAA KLDIGK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
