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Protein Overview: shakB-PA

General Information:
Name(s) found: shakB-PA / FBpp0111483 [FlyBase]
Description(s) found:
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  • gi|999305|gb|AAB34769.1| Shak-B (lethal) protein [Drosophila melanogaster] [NCBI NR]
  • gi|7295572|gb|AAF50883.1| shaking B, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|24643568|ref|NP_728361.1| shaking B, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|12644213|sp|P33085.3|SHAKB_DROME RecName: Full=Innexin shaking-B; AltName: Full=Protein passover [NCBI NR]
  • gi|1095427|prf||2108404B Passover gene [NCBI NR]
  • (P33085) Innexin shaking-B (Passover protein) [Swiss-Prot]
  • Innexin shaking-B OS=Drosophila melanogaster GN=shakB PE=1 SV=3 [Swiss-Prot]
  • The gene shaking B is referred to in FlyBase by the symbol Dmel\shakB (CG34358, FBgn0085387). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:20642289..20697483. It has the cytological map location 19E3. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: phototransduction; jump response. 49 alleles are reported. The phenotypes of these alleles are annotated with 26 unique terms, many of which group under: hypodermal muscle of larval abdomen; abdominal oblique muscle; external compound sense organ; adult segment; peripheral nervous system; nervous system; abdominal ventral oblique muscle 4; organ system; larval abdominal segment 5; multi-cell-component structure; adult mesothoracic segment. It has 5 annotated transcripts and 5 annotated polypeptides. [FlyBase]
  • >CG32508-PA translation from_gene[CG32508 shakB FBgn0003037] seq_release:3 mol_weight=44356 cds_boundaries:(X:20,444,999..20,457,042[-]) aa_length:372 transcript_info:[CG32508-RA seq_release:3] gene_info:[gene symbol:shakB synonyms:[CG1321 CG15451] FLA [hmr_yeast5_DM3-1_pombe.fasta]
  • (AE003570) shakB gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG32508-PA, isoform A [Drosophila melanogaster]gi|24643568|ref|NP_728361.1| CG32508-PA [Drosophila melanogaster]gi|999305|gb|AAB34769.1| Shak-B (lethal) protein [Drosophila melanogaster]gi|12644213|sp|P33085|SHAK_DROME Innexin shaking-B (Passover prote [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(20643608..20643800,20644179..20644357,20644418..20644584,20646525..20646589,20647121..20647275,20655295..20655654); ID=FBpp0111483; name=shakB-PA; parent=FBgn0085387,FBtr0112571; dbxref=GB_protein:AAF50883.1,FlyBase:FBpp0111 [fly-100309-contam.fasta]
  • Shak-B (lethal) protein [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG32508-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • shaking B CG32508-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Innexin shaking-B (Protein passover) [nr-271106-contam.fasta]
  • Passover gene [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(20643608..20643800,20644179..20644357,20644418..20644584,20646525..20646589,20647121..20647275,20655295..20655654); ID=FBpp0111483; name=shakB-PA; parent=FBgn0085387,FBtr0112571; dbxref=GB_protein:AAF50883.1,FlyBase:FBpp0111483,FlyBase_Annotation_IDs:CG34358-PA,FlyBase:FBpp0076981,FlyBase_Annotation_IDs:CG32508-PA,REFSEQ:NP_728361,GB_protein:AAF50883; MD5=c0872254ea12fc5f7e45d4fd95ffa003; length=372; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(20643608..20643800,20644179..20644357,20644418..20644584,20646525..20646589,20647121..20647275,20655295..20655654); ID=FBpp0111483; name=shakB-PA; parent=FBgn0085387,FBtr0112571; dbxref=GB_protein:AAF50883.1,FlyBase:FBpp0111483,FlyBase_Annotation_IDs:CG34358-PA,FlyBase:FBpp0076981,FlyBase_Annotation_IDs:CG32508-PA,REFSEQ:NP_728361,GB_protein:AAF50883; MD5=c0872254ea12fc5f7e45d4fd95ffa003; length=372; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=X:complement(20643608..20643800,20644179..20644357,20644418..20644584,20646525..20646589,20647121..20647275,20655295..20655654); ID=FBpp0111483; name=shakB-PA; parent=FBgn0085387,FBtr0112571; dbxref=GB_protein:AAF50883.1,FlyBase:FBpp0111483,FlyBase_Annotation_IDs:CG34358-PA,FlyBase:FBpp0076981,FlyBase_Annotation_IDs:CG32508-PA,REFSEQ:NP_728361,GB_protein:AAF50883,FlyMine:FBpp0111483,modMine:FBpp0111483; MD5=c0872254ea12fc5f7e45d4fd95ffa003; length=372; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:complement(join(20784268..20784627,20776094..20776248,20775498..20775562,20773391..20773557,20773152..20773330,20772581..20772773)); ID=FBpp0111483; name=shakB-PA; parent=FBgn0085387,FBtr0112571; dbxref=GB_protein:AAF50883.1,FlyBase:FBpp0111483,FlyBase_Annotation_IDs:CG34358-PA,FlyBase:FBpp0076981,FlyBase_Annotation_IDs:CG32508-PA,REFSEQ:NP_728361,GB_protein:AAF50883,FlyMine:FBpp0111483,modMine:FBpp0111483; MD5=c0872254ea12fc5f7e45d4fd95ffa003; length=372; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(20784268..20784627,20776094..20776248,20775498..20775562,20773391..20773557,20773152..20773330,20772581..20772773)); ID=FBpp0111483; name=shakB-PA; parent=FBgn0085387,FBtr0112571; dbxref=GB_protein:AAF50883.1,FlyBase:FBpp0111483,FlyBase_Annotation_IDs:CG34358-PA,FlyBase:FBpp0076981,FlyBase_Annotation_IDs:CG32508-PA,REFSEQ:NP_728361,GB_protein:AAF50883,FlyMine:FBpp0111483,modMine:FBpp0111483; MD5=c0872254ea12fc5f7e45d4fd95ffa003; length=372; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0111483 type=protein; loc=X:complement(join(20784268..20784627,20776094..20776248,20775498..20775562,20773391..20773557,20773152..20773330,20772581..20772773)); ID=FBpp0111483; name=shakB-PA; parent=FBgn0085387,FBtr0112571; dbxref=GB_protein:AAF50883.1,FlyBase:FBpp0111483,FlyBase_Annotation_IDs:CG34358-PA,FlyBase:FBpp0076981,FlyBase_Annotation_IDs:CG32508-PA,REFSEQ:NP_728361,GB_protein:AAF50883,FlyMine:FBpp0111483,modMine:FBpp0111483; MD5=c0872254ea12fc5f7e45d4fd95ffa003; length=372; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:complement(join(20784268..20784627,20776094..20776248,20775498..20775562,20773391..20773557,20773152..20773330,20772581..20772773)); ID=FBpp0111483; name=shakB-PA; parent=FBgn0085387,FBtr0112571; dbxref=GB_protein:AAF50883.1,FlyBase:FBpp0111483,FlyBase_Annotation_IDs:CG34358-PA,FlyBase:FBpp0076981,FlyBase_Annotation_IDs:CG32508-PA,REFSEQ:NP_728361,GB_protein:AAF50883,UniProt/Swiss-Prot:P33085,FlyMine:FBpp0111483,modMine:FBpp0111483; MD5=c0872254ea12fc5f7e45d4fd95ffa003; length=372; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 372 amino acids

    Gene Ontology:
    Cellular Component: gap junction [NAS]
    Biological Process: jump response [IMP]
    phototransduction [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDIFRGLKN LVKVSHVKTD SIVFRLHYSI TVMILMSFSL IITTRQYVGN PIDCVHTKDI  60
   61 PEDVLNTYCW IQSTYTLKSL FLKKQGVSVP YPGIGNSDGD PADKKHYKYY QWVCFCLFFQ 120
  121 AILFYTPRWL WKSWEGGKIH ALIMDLDIGI CSEAEKKQKK KLLLDYLWEN LRYHNWWAYR 180
  181 YYVCELLALI NVIGQMFLMN RFFDGEFITF GLKVIDYMET DQEDRMDPMI YIFPRMTKCT 240
  241 FFKYGSSGEV EKHDAICILP LNVVNEKIYI FLWFWFILLT FLTLLTLIYR VVIIFSPRMR 300
  301 VYLFRMRFRL VRRDAIEIIV RRSKMGDWFL LYLLGENIDT VIFRDVVQDL ANRLGHNQHH 360
  361 RVPGLKGEIQ DA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..134] MSA 7.111985 View MSA. No confident structure predictions are available.
    2 View Details [135..372] MSA 2.105979 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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