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Protein Overview: CG6961-PA

General Information:
Name(s) found: CG6961-PA / FBpp0074431 [FlyBase]
Description(s) found:
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  • gi|24643116|ref|NP_573325.1| CG6961 [Drosophila melanogaster] [NCBI NR]
  • gi|22832522|gb|AAF48885.2| CG6961 [Drosophila melanogaster] [NCBI NR]
  • gi|16769518|gb|AAL28978.1| LD35981p [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG6961 (CG6961, FBgn0030959). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:18680175..18682238. It has the cytological map location 17D5-17D6. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG6961-PA translation from_gene[CG6961 CG6961 FBgn0030959] seq_release:3 mol_weight=53016 cds_boundaries:(X:18,517,422..18,519,018[-]) aa_length:474 transcript_info:[CG6961-RA seq_release:3] gene_info:[gene symbol:CG6961 FBgn0030959 gene_boundaries:(X [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VWQ3) CG6961 protein (LD35981p) [DrosMelano7227.FASTAC.txt]
  • CG6961-PA [Drosophila melanogaster]gi|16769518|gb|AAL28978.1| LD35981p [Drosophila melanogaster]gi|24643116|ref|NP_573325.1| CG6961-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(18680494..18680575,18680632..18681373,18681431..18681951,18682014..18682093); ID=FBpp0074431; name=CG6961-PA; parent=FBgn0030959,FBtr0074660; dbxref=FlyBase:FBpp0074431,FlyBase_Annotation_IDs:CG6961-PA,GB_protein:AAF48885.2, [fly-100309-contam.fasta]
  • CG6961-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD35981p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(18680494..18680575,18680632..18681373,18681431..18681951,18682014..18682093); ID=FBpp0074431; name=CG6961-PA; parent=FBgn0030959,FBtr0074660; dbxref=FlyBase:FBpp0074431,FlyBase_Annotation_IDs:CG6961-PA,GB_protein:AAF48885.2,REFSEQ:NP_573325,GB_protein:AAF48885; MD5=6dc38ff6a12c5513175baba7ab19ef89; length=474; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(18680494..18680575,18680632..18681373,18681431..18681951,18682014..18682093); ID=FBpp0074431; name=CG6961-PA; parent=FBgn0030959,FBtr0074660; dbxref=FlyBase:FBpp0074431,FlyBase_Annotation_IDs:CG6961-PA,GB_protein:AAF48885.2,REFSEQ:NP_573325,GB_protein:AAF48885; MD5=6dc38ff6a12c5513175baba7ab19ef89; length=474; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG6961 OS=Drosophila melanogaster GN=CG6961 PE=1 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:complement(18680494..18680575,18680632..18681373,18681431..18681951,18682014..18682093); ID=FBpp0074431; name=CG6961-PA; parent=FBgn0030959,FBtr0074660; dbxref=FlyBase:FBpp0074431,FlyBase_Annotation_IDs:CG6961-PA,GB_protein:AAF48885.2,REFSEQ:NP_573325,GB_protein:AAF48885,FlyMine:FBpp0074431,modMine:FBpp0074431; MD5=6dc38ff6a12c5513175baba7ab19ef89; length=474; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG6961 OS=Drosophila melanogaster GN=CG6961 PE=2 SV=2 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=X:complement(join(18787981..18788060,18787398..18787918,18786599..18787340,18786461..18786542)); ID=FBpp0074431; name=CG6961-PA; parent=FBgn0030959,FBtr0074660; dbxref=FlyBase:FBpp0074431,FlyBase_Annotation_IDs:CG6961-PA,GB_protein:AAF48885.2,REFSEQ:NP_573325,GB_protein:AAF48885,FlyMine:FBpp0074431,modMine:FBpp0074431; MD5=6dc38ff6a12c5513175baba7ab19ef89; length=474; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(18787981..18788060,18787398..18787918,18786599..18787340,18786461..18786542)); ID=FBpp0074431; name=CG6961-PA; parent=FBgn0030959,FBtr0074660; dbxref=FlyBase:FBpp0074431,FlyBase_Annotation_IDs:CG6961-PA,GB_protein:AAF48885.2,REFSEQ:NP_573325,GB_protein:AAF48885,FlyMine:FBpp0074431,modMine:FBpp0074431; MD5=6dc38ff6a12c5513175baba7ab19ef89; length=474; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0074431 type=protein; loc=X:complement(join(18787981..18788060,18787398..18787918,18786599..18787340,18786461..18786542)); ID=FBpp0074431; name=CG6961-PA; parent=FBgn0030959,FBtr0074660; dbxref=FlyBase:FBpp0074431,FlyBase_Annotation_IDs:CG6961-PA,GB_protein:AAF48885.2,REFSEQ:NP_573325,GB_protein:AAF48885,FlyMine:FBpp0074431,modMine:FBpp0074431; MD5=6dc38ff6a12c5513175baba7ab19ef89; length=474; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:complement(join(18787981..18788060,18787398..18787918,18786599..18787340,18786461..18786542)); ID=FBpp0074431; name=CG6961-PA; parent=FBgn0030959,FBtr0074660; dbxref=FlyBase:FBpp0074431,FlyBase_Annotation_IDs:CG6961-PA,GB_protein:AAF48885.2,REFSEQ:NP_573325,GB_protein:AAF48885,UniProt/TrEMBL:Q9VWQ3,FlyMine:FBpp0074431,modMine:FBpp0074431; MD5=6dc38ff6a12c5513175baba7ab19ef89; length=474; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 474 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIDLSLDEI IERKRGQRGY RPLDRKFNAN FSKPRQLLNK PFFKPSGARG SHSDMPAKRT  60
   61 FDARNTIAAK TRAKIADARD LINKSVRDSG IDARQLLLER KKARSAGPIL IDDEEESFEP 120
  121 SHRARGKGVH IGQFGHRLSM SNHADGTIQA KWDSDDGVVE LGNHMLSGLR RTFDPRSHKP 180
  181 GKPFAPRRYI DLDNMQDLED EEISRTLHLG QMKQASPRYS IGGLDLNRGD DVEMSMAPLN 240
  241 NKIDNNAFSI YEAARNRIER PSLTNRLVVG RSNSTKEPLE RRHRDTVSTS KLPESLRSRL 300
  301 FVGKRDPHIS HGIYANENRR KAVGGGGGSD SDSGTDSDGD AAAPSKNKRR SPSPLSLRTS 360
  361 NTKDGYRLLV SNLHTNVTTA DIRELFSDIG PVYDARVVRP GTAEVIYKSL EHAEKAVDTY 420
  421 HHRQFDDQPM HCVLVNPHSS RRSVHKASSR TVTTNSSGVE VDIDALHSVL FRAR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..178] PSI-BLAST 28.0 Poly(A)-binding protein
    2 View Details [179..474] PSI-BLAST 18.39794 No description for 2ghpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle