YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG18259-PA

General Information:
Name(s) found: CG18259-PA / FBpp0074432 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|24643110|ref|NP_573324.1| CG18259 [Drosophila melanogaster] [NCBI NR]
  • gi|22832520|gb|AAF48882.2| CG18259 [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG18259 (CG18259, FBgn0030956). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:18675298..18677524. It has the cytological map location 17D5. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: nucleotide binding; nucleic acid binding. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG18259-PA translation from_gene[CG18259 CG18259 FBgn0030956] seq_release:3 mol_weight=53083 cds_boundaries:(X:18,512,737..18,514,333[-]) aa_length:474 transcript_info:[CG18259-RA seq_release:3] gene_info:[gene symbol:CG18259 FBgn0030956 gene_boundari [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VWQ6) CG18259 protein [DrosMelano7227.FASTAC.txt]
  • CG18259-PA [Drosophila melanogaster]gi|24643110|ref|NP_573324.1| CG18259-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(18675809..18675890,18675947..18676688,18676746..18677266,18677329..18677408); ID=FBpp0074432; name=CG18259-PA; parent=FBgn0030956,FBtr0074661; dbxref=FlyBase:FBpp0074432,FlyBase_Annotation_IDs:CG18259-PA,GB_protein:AAF48882. [fly-100309-contam.fasta]
  • CG18259-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(18675809..18675890,18675947..18676688,18676746..18677266,18677329..18677408); ID=FBpp0074432; name=CG18259-PA; parent=FBgn0030956,FBtr0074661; dbxref=FlyBase:FBpp0074432,FlyBase_Annotation_IDs:CG18259-PA,GB_protein:AAF48882.2,REFSEQ:NP_573324,GB_protein:AAF48882; MD5=3d2ef7ebb46fc6f7a720044dd830ccc8; length=474; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(18675809..18675890,18675947..18676688,18676746..18677266,18677329..18677408); ID=FBpp0074432; name=CG18259-PA; parent=FBgn0030956,FBtr0074661; dbxref=FlyBase:FBpp0074432,FlyBase_Annotation_IDs:CG18259-PA,GB_protein:AAF48882.2,REFSEQ:NP_573324,GB_protein:AAF48882; MD5=3d2ef7ebb46fc6f7a720044dd830ccc8; length=474; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG18259 OS=Drosophila melanogaster GN=CG18259-RA PE=1 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:complement(18675809..18675890,18675947..18676688,18676746..18677266,18677329..18677408); ID=FBpp0074432; name=CG18259-PA; parent=FBgn0030956,FBtr0074661; dbxref=FlyBase:FBpp0074432,FlyBase_Annotation_IDs:CG18259-PA,GB_protein:AAF48882.2,REFSEQ:NP_573324,GB_protein:AAF48882,FlyMine:FBpp0074432,modMine:FBpp0074432; MD5=3d2ef7ebb46fc6f7a720044dd830ccc8; length=474; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG18259 OS=Drosophila melanogaster GN=CG18259-RA PE=2 SV=2 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=X:complement(join(18783296..18783375,18782713..18783233,18781914..18782655,18781776..18781857)); ID=FBpp0074432; name=CG18259-PA; parent=FBgn0030956,FBtr0074661; dbxref=FlyBase:FBpp0074432,FlyBase_Annotation_IDs:CG18259-PA,GB_protein:AAF48882.2,REFSEQ:NP_573324,GB_protein:AAF48882,FlyMine:FBpp0074432,modMine:FBpp0074432; MD5=3d2ef7ebb46fc6f7a720044dd830ccc8; length=474; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(18783296..18783375,18782713..18783233,18781914..18782655,18781776..18781857)); ID=FBpp0074432; name=CG18259-PA; parent=FBgn0030956,FBtr0074661; dbxref=FlyBase:FBpp0074432,FlyBase_Annotation_IDs:CG18259-PA,GB_protein:AAF48882.2,REFSEQ:NP_573324,GB_protein:AAF48882,FlyMine:FBpp0074432,modMine:FBpp0074432; MD5=3d2ef7ebb46fc6f7a720044dd830ccc8; length=474; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FI13061p OS=Drosophila melanogaster GN=CG18259-RA PE=2 SV=2 [DROME.fasta.20160308]
  • FBpp0074432 type=protein; loc=X:complement(join(18783296..18783375,18782713..18783233,18781914..18782655,18781776..18781857)); ID=FBpp0074432; name=CG18259-PA; parent=FBgn0030956,FBtr0074661; dbxref=FlyBase:FBpp0074432,FlyBase_Annotation_IDs:CG18259-PA,GB_protein:AAF48882.2,REFSEQ:NP_573324,GB_protein:AAF48882,FlyMine:FBpp0074432,modMine:FBpp0074432; MD5=3d2ef7ebb46fc6f7a720044dd830ccc8; length=474; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:complement(join(18783296..18783375,18782713..18783233,18781914..18782655,18781776..18781857)); ID=FBpp0074432; name=CG18259-PA; parent=FBgn0030956,FBtr0074661; dbxref=FlyBase:FBpp0074432,FlyBase_Annotation_IDs:CG18259-PA,GB_protein:AAF48882.2,REFSEQ:NP_573324,GB_protein:AAF48882,UniProt/TrEMBL:Q9VWQ6,FlyMine:FBpp0074432,modMine:FBpp0074432; MD5=3d2ef7ebb46fc6f7a720044dd830ccc8; length=474; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 474 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIDLSLDEI IERKRGQRGY RPLDRKFNAN FSKPRQLLNK PFFKPSGARG SHSDTPAKRT  60
   61 FDARNTIAAK TRAKIADARD LINKSVRDSG IDARQLLLER KKARSAGPIL IDDEEESFEP 120
  121 SHRARGKGVH IGQFGHRLSM SNHADGTIQA KWDSDDGVVE LGNHMLSGLR RTFDPRSHKP 180
  181 GKPFAPRRYI DLDNMQDLED EEISRTLHLG QMKQASPRYS IGGLDLNRGD DVEMSMAPLN 240
  241 NKIDNNAFSI YEAARNRIER PSLTNRLVVG RSNTTKEPLE RRHRDTASTS KLPESLRSRL 300
  301 FVGKRDPHIS HGIYANENRR KAVGGGGARD SDSGTDSDGD AAAPSKNKRR SPSPLSLRTS 360
  361 NTKDGYRLLV SNLHTNVTTA DIRELFSDIG PVYDARVVRP GTAEVIYKSL EHAEKAVDTY 420
  421 HHRQFDDQPM HCVLVNPHSS RRSVHKASSR TVTTNSSGVE VDIDALHSVL FRVR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] deduced N/A No confident structure predictions are available.
    2 View Details [102..180] PSI-BLAST 33.69897 Poly(A)-binding protein
    3 View Details [181..474] PSI-BLAST 17.69897 No description for 2ghpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle