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Protein Overview: gi|28571335, gi|...

General Information:
Name(s) found: gi|28571335 [NCBI NR]
gi|28381643 [NCBI NR]
Description(s) found:
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  • gi|28571335|ref|NP_788924.1| CG8557-PB, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|28381643|gb|AAO41695.1| CG8557-PB, isoform B [Drosophila melanogaster] [NCBI NR]
  • >CG8557-PB translation from_gene[CG8557 CG8557 FBgn0030842] seq_release:3 mol_weight=188881 cds_boundaries:(X:17,189,183..17,196,410[-]) aa_length:1740 transcript_info:[CG8557-RB seq_release:3] gene_info:[gene symbol:CG8557 FBgn0030842 gene_boundaries: [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q86B45) CG8557-PB [DrosMelano7227.FASTAC.txt]
  • CG8557-PB, isoform B [Drosophila melanogaster]gi|28571335|ref|NP_788924.1| CG8557-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • CG8557-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1740 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLGQNWRLS GFDAPPSTRP KLSHNPSPTP QKLAVIANGD MTAMAKSYEH KLNSGSWEDT  60
   61 LDEPHHHHAH HSHHQQHLHQ HHSHLSQRHQ QQQQQQQQLQ QTSFIGSPPS SASITTAQLH 120
  121 SAFSRRIAEQ RERDQRDQRD QREAVGCTAA TIAGGSFSAN GGQAAVGVGV GSSSSCGSSS 180
  181 ERDTKSPCRE RDRNLERDRD RERDKNDDLG EEEVLTEEEQ TSSSVSSLSA GNQRNSQLRS 240
  241 TFNKAKQHLS FDKWRTAATG SATGSASGPG SSATDSNNAA SNMIMRRASA CTMPSSGGGG 300
  301 GAGVGSSQRE EATTPGESPG GRLSRWFSIR RGSSHQYDVG GRDGRHSTAS SFDTPDSGSG 360
  361 NSPKNGSNAV AGTGGAGSQG VALDAASPQK LANLGASKMM PGVPESEDDE ATANRFDVDL 420
  421 MMTPGSRANG TARTAHNRLI VPMLPPAPAG LSQQQLKRRH IVAAIVHSEN SYVATLQRLV 480
  481 NDYKKPLEEC SPPVLNPVKI ATLFHCLPDI LHSHKLFRIS LAECVRNWDR DEKIGDCFVS 540
  541 AFGKPQLLEI YSGFINNFSA AMELAKMEEK RKSALADFFK VKQISAHDRL SFFGLMVKPV 600
  601 QRFPQFILFL QDLLKYTPQG HHDRMSLQLA LSQLELLAEL LNESKREAEQ YQAFKEMLGH 660
  661 ISGTFNARSL SLSSVSVSDS AGGHRPRYLL REDNVTHMEF NQAGFIVKCK QRRLLLLNDK 720
  721 VICVSVAPKQ SHDFGATEKL TFKWMFPVND VEIVDNSTSA TLSRILTAGL NRGGSLKSNG 780
  781 SSGANGSPYA NSTLPGHGGG VSGFSGFGDP HSSPAAQLTN GADNLCSEMS TLMYDYEVIS 840
  841 RIQDLVSSLK GSYKELNANT TRNVLNLIQG SIQRKDEEMA WVDSCCLQLI GRHKSGKEET 900
  901 FTFQTQTPAV KKEWITELRL AQLALDPNNS PAWERGGSHP QPAHHHPHHH PLQHPHAGAG 960
  961 DPRQTQEQLQ LQEAVQQKQS RKMPLFVKAM PVYKSQHQTE VRCGCYYSIA NDTKQSGNAR1020
 1021 RRHKQLNYLW MCSSDGTSSH ITVLAQHPQQ AGNLREAGAF DLFETQVSAL EFVKGLDQLK1080
 1081 SRDEPASLLG DLVWLGTDSR KILIYSARNP EQEEQLGSYS VPGAVQRILY HFDAVYVALS1140
 1141 GATVLIFRRG NDGVWQLRDP QTIRLGDTDL VVPSLLPINM CIYASCGNRV YVMNALNGEI1200
 1201 QRSFEVQHGA TQQVNLMAHS GIGLWISLKN STMLCLYHTE TFKHLQDINI ASSVLRHDGK1260
 1261 KEQPLNNSSV YVTALMACKG LLWVGTNVGI AVTIPLPRLE GVPIISGGIN MSCHAHFGPI1320
 1321 TFLLPLIPKV YPAYKPPTVG AAPLVPSMGD DLQLPAIDAD PKIQELDDGA VVLRRDLAKE1380
 1381 EMSSSNPGAD STASSPRSSK LDKQNSLDQS FTAKIRASLA NSPAFHRKRF RDDPNRMSKT1440
 1441 LPRGLGAAAA GSGAGGASAA GSGTASGNTS QHGEHGICDV YGLYGKLIFV KEDYDAEEGN1500
 1501 QGNLMDMMYE GMRRSDPELA AIPGKVCTLD RRLRMKASRP RSLDLSNWSV DSKSSSLYTS1560
 1561 SGSEESMGIR HFGGRSVSRN SSSASHKTSG TGSDLGNISE NGLMTTADIH HHQQQQQQLN1620
 1621 SSAKPDEMSR LGAGNSGLDK PAAAVATLKR KQKQNSKQQQ QQNADGPRTV ITLMGGRGYW1680
 1681 RQMWYNGAGG SPSHKNSSSG GGGGSGSGFS GQTMQSGNPS CSPLTANSND AHIVVWEKKL1740
 1741

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..259] MSA 9.424997 View MSA. No confident structure predictions are available.
    2 View Details [260..342] deduced N/A No confident structure predictions are available.
    3 View Details [343..894] PSI-BLAST 64.69897 No description for 2pz1A was found.
    4 View Details [895..981] deduced N/A No confident structure predictions are available.
    5 View Details [982..1317] PSI-BLAST 35.522879 No description for 2ovpB was found.
    6 View Details [1318..1419] PSI-BLAST 33.09691 F-box/WD-repeat protein 1 (beta-TRCP1)
    7 View Details [1420..1590] deduced N/A No confident structure predictions are available.
    8 View Details [1591..1740] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.70

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle