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Protein Overview: Rtc1-PA

General Information:
Name(s) found: Rtc1-PA / FBpp0073651 [FlyBase]
Description(s) found:
Found 22 descriptions.
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  • The gene Rtc1 is referred to in FlyBase by the symbol Dmel\Rtc1 (CG11130, FBgn0020909). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:13651210..13652631. It has the cytological map location 12B10-12C1. Based on sequence similarity, it is predicted to have molecular function</span>: RNA-3'-phosphate cyclase activity. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 384 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NAS]
    Biological Process: NONE FOUND
    Molecular Function: RNA-3'-phosphate cyclase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPIAQEGNC LIYRGSNFLK QRLILACLSG KPVKISQIRS EDETAPGLRE YEISLIRLLD  60
   61 KITNGTKIEL NPAGTSVMFS PGLLHGGQLN HDCCVQRGIG YYLDALIALG PFCKSPLQCT 120
  121 LRGVTNSKDS PSVDHIKGAA LSLLKRFLLV DEGLELKVVR RGVAPLGGGE IIFRCPVRKS 180
  181 LRAIQFQSQG MVKRIRGTVY ACKVSPAMAN RTVEAAKGCM LKFLPDVYIY TDQNKGKMSG 240
  241 NSPGFGICLI AETTDGVCFA ADCCSNTREE SEDTPSIPEN LGKEVALRLL DEIYRGGCVD 300
  301 SSYQWLAALY IALGQKHVSK FLTGALSNYT VHFLQHLRDF FSITFKLENP EAEDEDEAEN 360
  361 VRGAQKVLMA CVGIGYTNIN KRVI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..384] PSI-BLAST 100.0 RNA 3'-terminal phosphate cyclase, RPTC, insert domain; RNA 3'-terminal phosphate cyclase, RPTC

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.54689525592227 bayes_pls_golite062009
  • transferase activity
    		•  1.7007536630883 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  1.24131488513793 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle