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View Structure Prediction Details

Protein: Rtc1-PA
Organism: Drosophila melanogaster
Length: 384 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rtc1-PA.

Description E-value Query
Range
Subject
Range
gi|147904523, gi... - gi|28277297|gb|AAH45026.1| MGC53171 protein [Xenopus laevis], gi|147904523|ref|NP_001079592.1| simil...
477.0 [0..4] [383..1]

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Predicted Domain #1
Region A:
Residues: [1-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPIAQEGNC LIYRGSNFLK QRLILACLSG KPVKISQIRS EDETAPGLRE YEISLIRLLD  60
   61 KITNGTKIEL NPAGTSVMFS PGLLHGGQLN HDCCVQRGIG YYLDALIALG PFCKSPLQCT 120
  121 LRGVTNSKDS PSVDHIKGAA LSLLKRFLLV DEGLELKVVR RGVAPLGGGE IIFRCPVRKS 180
  181 LRAIQFQSQG MVKRIRGTVY ACKVSPAMAN RTVEAAKGCM LKFLPDVYIY TDQNKGKMSG 240
  241 NSPGFGICLI AETTDGVCFA ADCCSNTREE SEDTPSIPEN LGKEVALRLL DEIYRGGCVD 300
  301 SSYQWLAALY IALGQKHVSK FLTGALSNYT VHFLQHLRDF FSITFKLENP EAEDEDEAEN 360
  361 VRGAQKVLMA CVGIGYTNIN KRVI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 100.0
Match: 1qmhA
Description: RNA 3'-terminal phosphate cyclase, RPTC, insert domain; RNA 3'-terminal phosphate cyclase, RPTC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.54689525592227 bayes_pls_golite062009
transferase activity 1.7007536630883 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.24131488513793 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle