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Protein Overview: g-PB

General Information:
Name(s) found: g-PB / FBpp0073673 [FlyBase]
Description(s) found:
Found 16 descriptions.
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  • The gene garnet is referred to in FlyBase by the symbol Dmel\g (CG10986, FBgn0001087). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:13621236..13630311. It has the cytological map location 12B4. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: protein binding; protein transporter activity. There is experimental evidence that it is involved in the biological process</span>: determination of adult lifespan; eye pigment granule organization; compound eye pigmentation; eye pigment biosynthetic process; ocellus pigment biosynthetic process; ommochrome biosynthetic process. 70 alleles are reported. The phenotypes of these alleles are annotated with: eye; testis sheath; Malpighian tubule; pigment granule; pigment cell. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1034 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKKVKGNF FERMFDKNLT DLVRGIRNNK DNEAKYISTC IEEIKQELRQ DNISVKCNAV  60
   61 AKLTYIQMLG YDISWAGFNI IEVMSSSRFT CKRIGYLAAS QCFHPDSELL MLTTNMIRKD 120
  121 LNSQNQYDAG VALSGLSCFI SPDLSRDLAN DIMTLMSSTK PYLRMKAVLM MYKVFLRYPE 180
  181 ALRPAFPKLK EKLEDPDPGV QSAAVNVICE LARKNPKNYL PLAPIFFKLM TTSTNNWMLI 240
  241 KIIKLFGALT PLEPRLGKKL IEPLTNLIHS TSAMSLLYEC INTVIAVLIS ISSGMPNHSA 300
  301 SIQLCVQKLR ILIEDSDQNL KYLGLLAMSK ILKTHPKSVQ AHKDLILACL DDKDESIRLR 360
  361 ALDLLYGMVS KKNLMEIVKR LLGHMERAEG SAYRDELLYK VIEICAQSSY LYVTNFEWYL 420
  421 TVLVELIQLE AGSRHGRLIA EQLLDVAIRV PVVRQFAVNE MTNLLDTFTV SAQSNSMYEV 480
  481 LYAAAWIVGE FAGELEDAEK TLNILLRPRL LPGHIQGVYV QNVIKLFARL ATTCLELQDL 540
  541 PGLVTLCDHV LDKLQHFNGS SDIEVQERAN SACMLIEMLR NQLSTSTDAM AMDTTTEGGI 600
  601 PPLAIEIVQE MTLLFTGELI PVAPKAQRKV PLPDGLDLDE WINAPPPEDA ASSSSSEHDK 660
  661 DELFVSATQA GTGADGGEKR RQSLELTPEQ LERQRMARLI EQSNNPHYLK STPTASGASN 720
  721 ADQYDNIDDI PITELPLDME GVAALRVGIT KRSDKYLQEQ QAAQGSKDGK KKHKKGKKSK 780
  781 KAKNKVAYNS SSESEGEPKP LHIVNTTLDM PEGVSMSDSE DKDGKYDPND PHRALDIELD 840
  841 ITEFEAPAVR SASKKSAADK ENLKTPADSA GGGNAAKKDR KKDKDKDKER KVKREHRESK 900
  901 RERKEAAVQS VIDLIDADTP TPSPSHISAT SNNNNTSTVL PDAPKHHKKK KNKEKTTDEA 960
  961 PDALATATGS SIIDVGGEEA SEVASKVHKK KHKKEKSQRK EKKKASESAS VSAIVSIGDY1020
 1021 EQPLGISTPS KEIL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..623] PSI-BLAST 129.0 AP1 clathrin adaptor core
    2 View Details [624..873] deduced N/A No confident structure predictions are available.
    3 View Details [874..1034] MSA 7.229997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle