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Protein Overview: FBpp0305945, FBp...

General Information:
Name(s) found: FBpp0305945 [FlyBase]
FBpp0303139 [FlyBase]
Description(s) found:
Found 29 descriptions.
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  • type=protein; loc=X:join(8321120..8321920,8321980..8322238,8322310..8323148); ID=FBpp0305945; name=Trf2-PJ; parent=FBgn0261793,FBtr0333811; dbxref=REFSEQ:NP_511084,GB_protein:AAF46368,FlyBase:FBpp0305945,FlyBase_Annotation_IDs:CG18009-PJ; MD5=ee81becc808898912e66f3bdd2878865; length=632; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=X:join(8321120..8321920,8321980..8322238,8322310..8323148); ID=FBpp0303139; name=Trf2-PH; parent=FBgn0261793,FBtr0330106; dbxref=REFSEQ:NP_996377,GB_protein:AAF46369,FlyBase:FBpp0303139,FlyBase_Annotation_IDs:CG18009-PH; MD5=ee81becc808898912e66f3bdd2878865; length=632; release=r5.56; species=Dmel; [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 632 amino acids

    Gene Ontology:
    Cellular Component: transcription factor complex [IDA]
    transcription factor TFIID complex [ISS]
    Biological Process: response to ecdysone [IMP]
    regulation of transcription, DNA-dependent [IEA]
    salivary gland cell autophagic cell death [IMP]
    pupal development [IMP]
    transcription initiation from RNA polymerase II promoter [ISS][TAS]
    regulation of transcription from RNA polymerase II promoter [IDA][IMP]
    Molecular Function: DNA binding [IEA]
    specific RNA polymerase II transcription factor activity [IDA][TAS]
    general RNA polymerase II transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNDMVSIPV ANLNGGLKAA SSGSGVGVVT SGGVVSSAVL ANAPRVYLTP SSTFMTNRQM  60
   61 AGVASTGRMS GQVVGGSSGT ASTAGTVRYF SQFSKMQTAG GPSLQRKLAN GDTIVLATGS 120
  121 KNMFLTSSEN KANLPTVASN GNGLITAKMD LLEEEVMQSI TVIDDDDEEK KEVAEDEEES 180
  181 SNNAKPIDLH QPIADNEHEL DIVINNVVCS FSVGCHLKLR EIALQGSNVE YRRENGMVTM 240
  241 KLRHPYTTAS IWSSGRITCT GATSESMAKV AARRYARCLG KLGFPTRFLN FRIVNVLGTC 300
  301 SMPWAIKIVN FSERHRENAS YEPELHPGVT YKMRDPDPKA TLKIFSTGSV TVTAASVNHV 360
  361 ESAIQHIYPL VFDFRKQRSA EELQHLRQKQ RLQAGGDPHE LEKNVLADNK TASLDNIFVN 420
  421 TTAAHSKSSS NDQTSAPATI LSSTVDSMPR LKQMVNYHQM MKQTQEERRH IMFNGEKANP 480
  481 ASTSSAAAAP STSSSSSSSG DNICANARRR ATECWATKLQ NKRPRYNDPG TTGTINAASS 540
  541 TASAATSSLA SQATHLRNPL KTAALANARM LGAKVTTCTR NSIIVQQPQR IQMQQQQQQL 600
  601 QPQQQQTSFS PSEFDVDDLI EEEENNELDM PF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..174] MSA 5.052996 View MSA. No confident structure predictions are available.
    2 View Details [175..377] PSI-BLAST 85.69897 TATA-box binding protein (TBP), C-terminal domain
    3 View Details [378..491] deduced N/A No confident structure predictions are available.
    4 View Details [492..632] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.48

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle