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Protein Overview: CG3823-PA

General Information:
Name(s) found: CG3823-PA / FBpp0070865 [FlyBase]
Description(s) found:
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  • gi|7290705|gb|AAF46152.1| CG3823 [Drosophila melanogaster] [NCBI NR]
  • gi|24640112|ref|NP_572313.1| CG3823 [Drosophila melanogaster] [NCBI NR]
  • gi|21064233|gb|AAM29346.1| GH10083p [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG3823 (CG3823, FBgn0029863). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:6198023..6200778. It has the cytological map location 5E7-5E8. Based on sequence similarity, it is predicted to have molecular function</span>: vitamin E binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: transport. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG3823-PA translation from_gene[CG3823 CG3823 FBgn0029863] seq_release:3 mol_weight=34139 cds_boundaries:(X:6,044,497..6,046,870[+]) aa_length:295 transcript_info:[CG3823-RA seq_release:3] gene_info:[gene symbol:CG3823 FBgn0029863 gene_boundaries:(X:6 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W408) CG3823 protein (GH10083p) [DrosMelano7227.FASTAC.txt]
  • (AE003437) CG3823 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG3823-PA [Drosophila melanogaster]gi|21064233|gb|AAM29346.1| GH10083p [Drosophila melanogaster]gi|24640112|ref|NP_572313.1| CG3823-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:join(6198154..6198256,6198750..6198909,6199717..6199798,6199899..6200326,6200416..6200530); ID=FBpp0070865; name=CG3823-PA; parent=FBgn0029863,FBtr0070900; dbxref=FlyBase:FBpp0070865,FlyBase_Annotation_IDs:CG3823-PA,GB_protein:AAF46152 [fly-100309-contam.fasta]
  • CG3823-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • GH10083p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:join(6198154..6198256,6198750..6198909,6199717..6199798,6199899..6200326,6200416..6200530); ID=FBpp0070865; name=CG3823-PA; parent=FBgn0029863,FBtr0070900; dbxref=FlyBase:FBpp0070865,FlyBase_Annotation_IDs:CG3823-PA,GB_protein:AAF46152.1,REFSEQ:NP_572313,GB_protein:AAF46152; MD5=b2b93eaa3d6af98ace40baca54180ea4; length=295; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:join(6198154..6198256,6198750..6198909,6199717..6199798,6199899..6200326,6200416..6200530); ID=FBpp0070865; name=CG3823-PA; parent=FBgn0029863,FBtr0070900; dbxref=FlyBase:FBpp0070865,FlyBase_Annotation_IDs:CG3823-PA,GB_protein:AAF46152.1,REFSEQ:NP_572313,GB_protein:AAF46152; MD5=b2b93eaa3d6af98ace40baca54180ea4; length=295; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG3823 OS=Drosophila melanogaster GN=CG3823 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:join(6198154..6198256,6198750..6198909,6199717..6199798,6199899..6200326,6200416..6200530); ID=FBpp0070865; name=CG3823-PA; parent=FBgn0029863,FBtr0070900; dbxref=FlyBase:FBpp0070865,FlyBase_Annotation_IDs:CG3823-PA,GB_protein:AAF46152.1,REFSEQ:NP_572313,GB_protein:AAF46152,FlyMine:FBpp0070865,modMine:FBpp0070865; MD5=b2b93eaa3d6af98ace40baca54180ea4; length=295; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:join(6304121..6304223,6304717..6304876,6305684..6305765,6305866..6306293,6306383..6306497); ID=FBpp0070865; name=CG3823-PA; parent=FBgn0029863,FBtr0070900; dbxref=FlyBase:FBpp0070865,FlyBase_Annotation_IDs:CG3823-PA,GB_protein:AAF46152.1,REFSEQ:NP_572313,GB_protein:AAF46152,FlyMine:FBpp0070865,modMine:FBpp0070865; MD5=b2b93eaa3d6af98ace40baca54180ea4; length=295; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:join(6304121..6304223,6304717..6304876,6305684..6305765,6305866..6306293,6306383..6306497); ID=FBpp0070865; name=CG3823-PA; parent=FBgn0029863,FBtr0070900; dbxref=FlyBase:FBpp0070865,FlyBase_Annotation_IDs:CG3823-PA,GB_protein:AAF46152.1,REFSEQ:NP_572313,GB_protein:AAF46152,FlyMine:FBpp0070865,modMine:FBpp0070865; MD5=b2b93eaa3d6af98ace40baca54180ea4; length=295; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0070865 type=protein; loc=X:join(6304121..6304223,6304717..6304876,6305684..6305765,6305866..6306293,6306383..6306497); ID=FBpp0070865; name=CG3823-PA; parent=FBgn0029863,FBtr0070900; dbxref=FlyBase:FBpp0070865,FlyBase_Annotation_IDs:CG3823-PA,GB_protein:AAF46152.1,REFSEQ:NP_572313,GB_protein:AAF46152,FlyMine:FBpp0070865,modMine:FBpp0070865; MD5=b2b93eaa3d6af98ace40baca54180ea4; length=295; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:join(6304121..6304223,6304717..6304876,6305684..6305765,6305866..6306293,6306383..6306497); ID=FBpp0070865; name=CG3823-PA; parent=FBgn0029863,FBtr0070900; dbxref=FlyBase:FBpp0070865,FlyBase_Annotation_IDs:CG3823-PA,GB_protein:AAF46152.1,REFSEQ:NP_572313,GB_protein:AAF46152,UniProt/TrEMBL:Q9W408,FlyMine:FBpp0070865,modMine:FBpp0070865; MD5=b2b93eaa3d6af98ace40baca54180ea4; length=295; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 295 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: transport [IEA]
    Molecular Function: vitamin E binding [ISS]
    transporter activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHLNEKAED QLMTTRISDL QDWLQAQPQL PQNISRLLLR RFLHTTRGDL SAAQRLLELN  60
   61 YGLRNKHAHI FIDRDPLDAS SQQLLQVADL VPLPGLTPEN NKLLFYRLID FDADKFNFTA 120
  121 AIKVFFMVAD CRFATENEER LSDGEIPVFD MAGYTLRHLT KTALGALRVY MKFVQEAHPV 180
  181 RLKEIHVLNC PSYVDKVMAV VKPFIKGEVF KLIHFHLPNA DTPYRHFPRS MLPEEYGGEA 240
  241 GKMSDLKLQW MQLLKEQRDY LMDTENWQIN KIKKNGQRKS SDSGVTEGLR SLEID

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..295] PSI-BLAST 54.69897 The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • vitamin E binding
    		•  7.60287756659728 bayes_pls_golite062009
  • retinoid binding
    		•  2.55932836548393 bayes_pls_golite062009
  • isoprenoid binding
    		•  2.50048436206147 bayes_pls_golite062009
  • vitamin binding
    		•  1.77103204070558 bayes_pls_golite062009
  • binding
    		•  1.48494259967762 bayes_pls_golite062009
  • phosphatidylinositol transporter activity
    		•  0.754580529725379 bayes_pls_golite062009
  • retinal binding
    		•  0.646905718502968 bayes_pls_golite062009
  • phospholipid transporter activity
    		•  0.48474525678945 bayes_pls_golite062009
  • protein binding
    		•  0.408110742195811 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle