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Protein Overview: FBpp0308792, lin...

General Information:
Name(s) found: FBpp0308792 [FlyBase]
lin-52-PA / FBpp0070805 [FlyBase]
Description(s) found:
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  • gi|7290627|gb|AAF46076.1| lin-52 [Drosophila melanogaster] [NCBI NR]
  • gi|55668994|gb|AAV54477.1| Myb-MuvB complex subunit Lin-52 [Drosophila melanogaster] [NCBI NR]
  • gi|24639949|ref|NP_572256.1| lin-52 [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=X:complement(5648235..5648389,5648470..5648574,5648649..5648822,5648878..5648917); ID=FBpp0308792; name=lin-52-PB; parent=FBgn0029800,FBtr0339744; dbxref=FlyBase:FBpp0308792,FlyBase_Annotation_IDs:CG15929-PB; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r5.56; species=Dmel; [FlyBase]
  • The gene lin-52 is referred to in FlyBase by the symbol Dmel\lin-52 (CG15929, FBgn0029800). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:5648235..5648917. It has the cytological map location 5B7. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: negative regulation of transcription from RNA polymerase II promoter. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG15929-PA translation from_gene[CG15929 CG15929 FBgn0029800] seq_release:3 mol_weight=17796 cds_boundaries:(X:5,494,580..5,495,259[-]) aa_length:157 transcript_info:[CG15929-RA seq_release:3] gene_info:[gene symbol:CG15929 FBgn0029800 gene_boundaries [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W482) CG15929 protein [DrosMelano7227.FASTAC.txt]
  • (AE003435) CG15929 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG15929-PA [Drosophila melanogaster]gi|24639949|ref|NP_572256.1| CG15929-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(5648235..5648389,5648470..5648574,5648649..5648822,5648878..5648917); ID=FBpp0070805; name=lin-52-PA; parent=FBgn0029800,FBtr0070840; dbxref=FlyBase:FBpp0070805,FlyBase_Annotation_IDs:CG15929-PA,GB_protein:AAF46076.1,REFSEQ: [fly-100309-contam.fasta]
  • Myb-MuvB complex subunit Lin-52 [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG15929-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • lin-52 CG15929-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(5648235..5648389,5648470..5648574,5648649..5648822,5648878..5648917); ID=FBpp0070805; name=lin-52-PA; parent=FBgn0029800,FBtr0070840; dbxref=FlyBase:FBpp0070805,FlyBase_Annotation_IDs:CG15929-PA,GB_protein:AAF46076.1,REFSEQ:NP_572256,GB_protein:AAF46076; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(5648235..5648389,5648470..5648574,5648649..5648822,5648878..5648917); ID=FBpp0070805; name=lin-52-PA; parent=FBgn0029800,FBtr0070840; dbxref=FlyBase:FBpp0070805,FlyBase_Annotation_IDs:CG15929-PA,GB_protein:AAF46076.1,REFSEQ:NP_572256,GB_protein:AAF46076; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Lin-52 OS=Drosophila melanogaster GN=lin-52 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:complement(5648235..5648389,5648470..5648574,5648649..5648822,5648878..5648917); ID=FBpp0070805; name=lin-52-PA; parent=FBgn0029800,FBtr0070840; dbxref=FlyBase:FBpp0070805,FlyBase_Annotation_IDs:CG15929-PA,GB_protein:AAF46076.1,REFSEQ:NP_572256,GB_protein:AAF46076,FlyMine:FBpp0070805,modMine:FBpp0070805; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • Lin-52 OS=Drosophila melanogaster GN=lin-52 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=X:complement(join(5754845..5754884,5754616..5754789,5754437..5754541,5754202..5754356)); ID=FBpp0070805; name=lin-52-PA; parent=FBgn0029800,FBtr0070840; dbxref=FlyBase:FBpp0070805,FlyBase_Annotation_IDs:CG15929-PA,GB_protein:AAF46076.1,REFSEQ:NP_572256,GB_protein:AAF46076,FlyMine:FBpp0070805,modMine:FBpp0070805; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(5754845..5754884,5754616..5754789,5754437..5754541,5754202..5754356)); ID=FBpp0308792; name=lin-52-PB; parent=FBgn0029800,FBtr0339744; dbxref=GB_protein:AHN59379,REFSEQ:NP_001284908,FlyBase:FBpp0308792,FlyBase_Annotation_IDs:CG15929-PB; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(5754845..5754884,5754616..5754789,5754437..5754541,5754202..5754356)); ID=FBpp0070805; name=lin-52-PA; parent=FBgn0029800,FBtr0070840; dbxref=FlyBase:FBpp0070805,FlyBase_Annotation_IDs:CG15929-PA,GB_protein:AAF46076.1,REFSEQ:NP_572256,GB_protein:AAF46076,FlyMine:FBpp0070805,modMine:FBpp0070805; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=X:complement(join(5754845..5754884,5754616..5754789,5754437..5754541,5754202..5754356)); ID=FBpp0308792; name=lin-52-PB; parent=FBgn0029800,FBtr0339744; dbxref=GB_protein:AHN59379,REFSEQ:NP_001284908,FlyBase:FBpp0308792,FlyBase_Annotation_IDs:CG15929-PB; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Lin-52, isoform A OS=Drosophila melanogaster GN=lin-52 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0070805 type=protein; loc=X:complement(join(5754845..5754884,5754616..5754789,5754437..5754541,5754202..5754356)); ID=FBpp0070805; name=lin-52-PA; parent=FBgn0029800,FBtr0070840; dbxref=FlyBase:FBpp0070805,FlyBase_Annotation_IDs:CG15929-PA,GB_protein:AAF46076.1,REFSEQ:NP_572256,GB_protein:AAF46076,FlyMine:FBpp0070805,modMine:FBpp0070805; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0308792 type=protein; loc=X:complement(join(5754845..5754884,5754616..5754789,5754437..5754541,5754202..5754356)); ID=FBpp0308792; name=lin-52-PB; parent=FBgn0029800,FBtr0339744; dbxref=GB_protein:AHN59379,REFSEQ:NP_001284908,FlyBase:FBpp0308792,FlyBase_Annotation_IDs:CG15929-PB; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:complement(join(5754845..5754884,5754616..5754789,5754437..5754541,5754202..5754356)); ID=FBpp0070805; name=lin-52-PA; parent=FBgn0029800,FBtr0070840; dbxref=FlyBase:FBpp0070805,FlyBase_Annotation_IDs:CG15929-PA,GB_protein:AAF46076.1,REFSEQ:NP_572256,GB_protein:AAF46076,UniProt/TrEMBL:Q9W482,FlyMine:FBpp0070805,modMine:FBpp0070805; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=X:complement(join(5754845..5754884,5754616..5754789,5754437..5754541,5754202..5754356)); ID=FBpp0308792; name=lin-52-PB; parent=FBgn0029800,FBtr0339744; dbxref=GB_protein:AHN59379,REFSEQ:NP_001284908,FlyBase:FBpp0308792,FlyBase_Annotation_IDs:CG15929-PB,UniProt/TrEMBL:Q9W482; MD5=5ddf5ff4bc38de25fa3149110bbe3969; length=157; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 157 amino acids

    Gene Ontology:
    Cellular Component: Myb complex [IDA]
    Biological Process: negative regulation of transcription from RNA polymerase II promoter [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNAETTTDL LSTETILKAA DEEVEKASAS SSSTLLAEKD VPEVKERPIT PEDELISMET  60
   61 LRPSPVQWPE RFPGMDEFLS MSDTPMYTRS TNYTSNLTDD DMVKINELAQ LPPEDLIDKI 120
  121 KSMHDEIYQL GLREAMEMTR GKLLGIFDRD RAPKRQP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..157] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle