YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0308792, lin...
Organism:	Drosophila melanogaster
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0308792, lin....

Description	E-value	Query Range	Subject Range
gi\|66770803 - gi\|66770803\|gb\|AAY54713.1\| IP04651p [Drosophila melanogaster]	219.0	[0..6]	[157..1]
gi\|109084300 - gi\|109084300\|ref\|XP_001093490.1\| PREDICTED: similar to lin-52 CG15929-PA [Macaca mulatta]	164.0	[0..52]	[151..47]
gi\|157774365 - gi\|157774365\|ref\|XP_001665248.1\| hypothetical protein CBG09984 [Caenorhabditis briggsae AF16] gi\|187031441, gi... - gi\|39590747\|emb\|CAE65119.1\| Hypothetical protein CBG09984 [Caenorhabditis briggsae], gi\|187031441\|em...	160.0	[0..38]	[148..26]
LIN52_MOUSE - Protein lin-52 homolog OS=Mus musculus GN=Lin52 PE=1 SV=1 ENSCJAT00000040119 - null gi\|149737369 - gi\|149737369\|ref\|XP_001490474.1\| PREDICTED: similar to lin-52 homolog [Equus caballus] gi\|151556047, gi... - gi\|156121277\|ref\|NP_001095786.1\| lin-52 homolog [Bos taurus], gi\|151556047\|gb\|AAI49966.1\| LIN52 prot... ENSOCUP000000150... - pep:novel chromosome:oryCun2:20:30816834:30931779:-1 gene:ENSOCUG00000017491 transcript:ENSOCUT00000... tr\|M3W5H3\|M3W5H3... - Lin-52 DREAM MuvB core complex component OS=Felis catus GN=LIN52 PE=4 SV=1 LIN52 - lin-52 homolog (C. elegans) ENSPTRT00000059408 - null	153.0	[0..52]	[151..15]
LIN52_CHICK - Protein lin-52 homolog OS=Gallus gallus GN=LIN52 PE=1 SV=1	152.0	[0..52]	[151..11]
LIN52_ONCMY - Protein lin-52 homolog OS=Oncorhynchus mykiss GN=lin52 PE=2 SV=1	152.0	[0..52]	[151..11]
LIN52_PONAB - Protein lin-52 homolog OS=Pongo abelii GN=LIN52 PE=3 SV=1 LIN52_PONPY - Lin-52 homolog - Pongo pygmaeus (Orangutan)	152.0	[0..52]	[151..13]
gi\|76628400 - gi\|76628400\|ref\|XP_875524.1\| PREDICTED: hypothetical protein [Bos taurus] gi\|193785810, gi... - gi\|193785810\|dbj\|BAG51245.1\| unnamed protein product [Homo sapiens], gi\|119601567\|gb\|EAW81161.1\| chr...	151.0	[0..52]	[151..11]
gi\|109478508, gi... - ref\|XP_343090.1\| similar to CG15929-PA [Rattus norvegicus], gi\|109479660\|ref\|XP_001056671.1\| PREDICT...	149.0	[0..52]	[151..11]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNAETTTDL LSTETILKAA DEEVEKASAS SSSTLLAEKD VPEVKERPIT PEDELISMET  60
   61 LRPSPVQWPE RFPGMDEFLS MSDTPMYTRS TNYTSNLTDD DMVKINELAQ LPPEDLIDKI 120
  121 KSMHDEIYQL GLREAMEMTR GKLLGIFDRD RAPKRQP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits