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Protein Overview: FBpp0309405, CG4...

General Information:
Name(s) found: FBpp0309405 [FlyBase]
CG4119-PA / FBpp0070765 [FlyBase]
Description(s) found:
Found 26 descriptions.
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  • type=protein; loc=X:join(5560439..5560501,5560590..5560831,5561243..5562365,5562431..5563259,5563335..5563978,5564084..5564179); ID=FBpp0309405; name=CG4119-PB; parent=FBgn0028474,FBtr0340463; dbxref=FlyBase:FBpp0309405,FlyBase_Annotation_IDs:CG4119-PB; MD5=30e60862de8db5011e39681c9cc99cd4; length=998; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG4119 (CG4119, FBgn0028474). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:5560127..5564586. It has the cytological map location 5A10-5A11. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. There is experimental evidence that it is involved in the biological process</span>: regulation of alternative nuclear mRNA splicing, via spliceosome. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 998 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IC]
    precatalytic spliceosome [IDA]
    Biological Process: regulation of alternative nuclear mRNA splicing, via spliceosome [IMP]
    nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYPPRAPMP PFMNTAIPPP HIMQNMAKPP RSFRNSATIS SQPTVYQRPP EPQPQFRGPI  60
   61 ITVFVGNISE RVPEALLKRI LNACGVVINW KRVSTFGFCE FDGPIAAMRA VRLLSEMEID 120
  121 GKKLVAKVDA KNKVLIEDYK EQECKNGDRS NPVDEKTEDE FAIAQMHEFL EEHKHEFEGF 180
  181 DSSSRADLYG SANRNKKTRR EEDIKMKVLS ENTLEEEKRN LISSEIGKFR MRAEEDEHRK 240
  241 ELEKEKEKEK LAASKEKERK KQREMERMSS TSKSGSSSTA AASSSSATAT SSTPAADGAD 300
  301 MSDKTDKESV AVVIKETVKE SKESASSTGR KESSSAAIEI TQKERRSDSK ETRRRRSKSR 360
  361 SKDRERERER ELRELRDKER ERERDRERER ERERNEMRER ERNEMRERER EREREREREE 420
  421 KLLKPVRDTW REKEMEDELR DRKKAEKKAR EKEIAYQTRL TDWEVREKRK AKENEKYRLK 480
  481 ELLRQEERET DAKRLKEFVE DYDDERDDSL YYRGRELQQR LAERVREADA DSKDREKEAE 540
  541 ELAELKSKFF SGEYENPSLE FEKARLEIEK LYEPRILINV NQEPPAAATS SVHQRKQAAS 600
  601 APGEDDEGQK QRQKSQQLDS YDPDMAGTND DDSISNDDRA SMADTASNAS GVYAKNNNND 660
  661 QSLSNSLSRH NSESRDSLAQ IHTPTQSAIL NDQESGHDAI LPSATPPMTM PLISLTLGNN 720
  721 LKKKKIEATG VFVNDDDNDE NINPKKRKLV PLDYDDNISN TTPSNHAASS GSGAANNSSS 780
  781 SNNNNSSSAD RQSSAVSAAT AAAAAVSQKI AQAFGGGSSG SGSGSGSGSN ASGGKNNGGG 840
  841 SSSSSNNKHN SNSKHGKNEA AASAGSSADA AAANIKKDEN GAKVYDEKRR HIKSIIDRIP 900
  901 TQKEELFNYK LDRNEIDSGL MERKIRPWIN KKIIEYIGEP EPTLVDFICS KVLAGSPPQS 960
  961 ILDDVQMVLD EEAEVFVVKM WRLLIYELDA KKSGLAGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..404] PSI-BLAST 22.09691 Heavy meromyosin subfragment
    2 View Details [405..692] FFAS03 1.11 No description for 2i1jA was found.
    3 View Details [693..998] PSI-BLAST 7.0 Tropomyosin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle