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Protein Overview: FBpp0310197, CG3...

General Information:
Name(s) found: FBpp0310197 [FlyBase]
CG3939-PA / FBpp0070484 [FlyBase]
Description(s) found:
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  • gi|4454131|emb|CAA23057.1| EG:140G11.5 [Drosophila melanogaster] [NCBI NR]
  • gi|22833008|gb|AAF45851.2| CG3939 [Drosophila melanogaster] [NCBI NR]
  • gi|21064667|gb|AAM29563.1| RH07711p [Drosophila melanogaster] [NCBI NR]
  • gi|20128977|ref|NP_570048.1| CG3939 [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=X:join(3069547..3069691,3069967..3070229); ID=FBpp0310197; name=CG3939-PB; parent=FBgn0040396,FBtr0343600; dbxref=FlyBase:FBpp0310197,FlyBase_Annotation_IDs:CG3939-PB; MD5=d4894beb815199391dd1412789716b22; length=135; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG3939 (CG3939, FBgn0040396). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:3069152..3070257. It has the cytological map location 3C9. Its molecular function is unknown. The biological processes in which it is involved are not known. 6 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG3939-PA translation from_gene[CG3939 EG:140G11.5 FBgn0040396] seq_release:3 mol_weight=15634 cds_boundaries:(X:2,933,952..2,934,631[+]) aa_length:135 transcript_info:[CG3939-RA seq_release:3] gene_info:[gene symbol:EG:140G11.5 FBgn0040396 gene_bound [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9U1K7) EG:140G11.5 protein (RH07711p) (CG3939-PA) [DrosMelano7227.FASTAC.txt]
  • CG3939-PA [Drosophila melanogaster]gi|21064667|gb|AAM29563.1| RH07711p [Drosophila melanogaster]gi|20128977|ref|NP_570048.1| CG3939-PA [Drosophila melanogaster]gi|4454131|emb|CAA23057.1| EG:140G11.5 [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:join(3069547..3069691,3069967..3070229); ID=FBpp0070484; name=CG3939-PA; parent=FBgn0040396,FBtr0070508; dbxref=FlyBase:FBpp0070484,FlyBase_Annotation_IDs:CG3939-PA,GB_protein:AAF45851.2,REFSEQ:NP_570048,GB_protein:AAF45851; MD5=d4894b [fly-100309-contam.fasta]
  • RH07711p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • EG:140G11.5 [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG3939-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG3939 [Drosophila melanogaster] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • type=protein; loc=X:join(3069547..3069691,3069967..3070229); ID=FBpp0070484; name=CG3939-PA; parent=FBgn0040396,FBtr0070508; dbxref=FlyBase:FBpp0070484,FlyBase_Annotation_IDs:CG3939-PA,GB_protein:AAF45851.2,REFSEQ:NP_570048,GB_protein:AAF45851; MD5=d4894beb815199391dd1412789716b22; length=135; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:join(3069547..3069691,3069967..3070229); ID=FBpp0070484; name=CG3939-PA; parent=FBgn0040396,FBtr0070508; dbxref=FlyBase:FBpp0070484,FlyBase_Annotation_IDs:CG3939-PA,GB_protein:AAF45851.2,REFSEQ:NP_570048,GB_protein:AAF45851; MD5=d4894beb815199391dd1412789716b22; length=135; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG3939 OS=Drosophila melanogaster GN=EG:140G11.5 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:join(3069547..3069691,3069967..3070229); ID=FBpp0070484; name=CG3939-PA; parent=FBgn0040396,FBtr0070508; dbxref=FlyBase:FBpp0070484,FlyBase_Annotation_IDs:CG3939-PA,GB_protein:AAF45851.2,REFSEQ:NP_570048,GB_protein:AAF45851,FlyMine:FBpp0070484,modMine:FBpp0070484; MD5=d4894beb815199391dd1412789716b22; length=135; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG3939 OS=Drosophila melanogaster GN=EG:140G11.5 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=X:join(3175514..3175658,3175934..3176196); ID=FBpp0070484; name=CG3939-PA; parent=FBgn0040396,FBtr0070508; dbxref=FlyBase:FBpp0070484,FlyBase_Annotation_IDs:CG3939-PA,GB_protein:AAF45851.2,REFSEQ:NP_570048,GB_protein:AAF45851,FlyMine:FBpp0070484,modMine:FBpp0070484; MD5=d4894beb815199391dd1412789716b22; length=135; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:join(3175514..3175658,3175934..3176196); ID=FBpp0310197; name=CG3939-PB; parent=FBgn0040396,FBtr0343600; dbxref=GB_protein:AHN59308,REFSEQ:NP_001284837,FlyBase:FBpp0310197,FlyBase_Annotation_IDs:CG3939-PB; MD5=d4894beb815199391dd1412789716b22; length=135; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:join(3175514..3175658,3175934..3176196); ID=FBpp0070484; name=CG3939-PA; parent=FBgn0040396,FBtr0070508; dbxref=FlyBase:FBpp0070484,FlyBase_Annotation_IDs:CG3939-PA,GB_protein:AAF45851.2,REFSEQ:NP_570048,GB_protein:AAF45851,FlyMine:FBpp0070484,modMine:FBpp0070484; MD5=d4894beb815199391dd1412789716b22; length=135; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=X:join(3175514..3175658,3175934..3176196); ID=FBpp0310197; name=CG3939-PB; parent=FBgn0040396,FBtr0343600; dbxref=GB_protein:AHN59308,REFSEQ:NP_001284837,FlyBase:FBpp0310197,FlyBase_Annotation_IDs:CG3939-PB; MD5=d4894beb815199391dd1412789716b22; length=135; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG3939, isoform A OS=Drosophila melanogaster GN=EG:140G11.5 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0070484 type=protein; loc=X:join(3175514..3175658,3175934..3176196); ID=FBpp0070484; name=CG3939-PA; parent=FBgn0040396,FBtr0070508; dbxref=FlyBase:FBpp0070484,FlyBase_Annotation_IDs:CG3939-PA,GB_protein:AAF45851.2,REFSEQ:NP_570048,GB_protein:AAF45851,FlyMine:FBpp0070484,modMine:FBpp0070484; MD5=d4894beb815199391dd1412789716b22; length=135; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0310197 type=protein; loc=X:join(3175514..3175658,3175934..3176196); ID=FBpp0310197; name=CG3939-PB; parent=FBgn0040396,FBtr0343600; dbxref=GB_protein:AHN59308,REFSEQ:NP_001284837,FlyBase:FBpp0310197,FlyBase_Annotation_IDs:CG3939-PB; MD5=d4894beb815199391dd1412789716b22; length=135; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:join(3175514..3175658,3175934..3176196); ID=FBpp0070484; name=CG3939-PA; parent=FBgn0040396,FBtr0070508; dbxref=FlyBase:FBpp0070484,FlyBase_Annotation_IDs:CG3939-PA,GB_protein:AAF45851.2,REFSEQ:NP_570048,GB_protein:AAF45851,UniProt/TrEMBL:Q9U1K7,FlyMine:FBpp0070484,modMine:FBpp0070484; MD5=d4894beb815199391dd1412789716b22; length=135; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=X:join(3175514..3175658,3175934..3176196); ID=FBpp0310197; name=CG3939-PB; parent=FBgn0040396,FBtr0343600; dbxref=GB_protein:AHN59308,REFSEQ:NP_001284837,FlyBase:FBpp0310197,FlyBase_Annotation_IDs:CG3939-PB,UniProt/TrEMBL:Q9U1K7; MD5=d4894beb815199391dd1412789716b22; length=135; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 135 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEYVPARGF KEMENLIKLY ENQRSPIYIY FYGEKDKDGR SWCPDCVAAE ETIMSAFRNH  60
   61 APADCMILVV DVGSRESWIG KDNMFRKPPY SVEGIPTLIR WKGVERLDGD QLLKSSLLEL 120
  121 FFEETDPKKS NFVAQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] PSI-BLAST 19.09691 Crystal Structure of human Trp14

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.618139748326926 bayes_pls_golite062009
  • protein-disulfide reductase activity
    		•  0.570446901634881 bayes_pls_golite062009
  • protein binding
    		•  0.134341907247724 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle