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Protein Overview: FBpp0310320, rst-PA

General Information:
Name(s) found: FBpp0310320 [FlyBase]
rst-PA / FBpp0070537 [FlyBase]
Description(s) found:
Found 28 descriptions.
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  • type=protein; loc=X:complement(2847848..2848563,2848686..2849234,2849574..2849676,2849981..2850211,2851090..2851290,2851494..2851988); ID=FBpp0310320; name=rst-PB; parent=FBgn0003285,FBtr0343758; dbxref=FlyBase:FBpp0310320,FlyBase_Annotation_IDs:CG4125-PB; MD5=bdcd3af5de75a16ee29f575617b166cb; length=764; release=r5.56; species=Dmel; [FlyBase]
  • The gene roughest is referred to in FlyBase by the symbol Dmel\rst (CG4125, FBgn0003285). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:2846240..2867865. It has the cytological map location 3C3-3C4. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: compound eye development; regulation of striated muscle tissue development; compound eye morphogenesis. 29 alleles are reported. The phenotypes of these alleles are annotated with 26 unique terms, many of which group under: peripheral nervous system; external compound sense organ; nervous system; adult segment; antennal segment; organ system; primordium; imaginal precursor; ommatidial precursor cluster; multi-cell-component structure. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 764 amino acids

    Gene Ontology:
    Cellular Component: apical part of cell [IDA]
    integral to membrane [NAS][TAS]
    plasma membrane [IDA][ISS][NAS]
    Biological Process: compound eye morphogenesis [IMP]
    axonogenesis [NAS]
    myoblast fusion [TAS]
    retinal cell programmed cell death [TAS]
    compound eye retinal cell programmed cell death [NAS][TAS]
    homophilic cell adhesion [TAS]
    regulation of striated muscle tissue development [IMP]
    compound eye development [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHTMQLLLL ATIVGMVRSS PYTSYQNQRF AMEPQDQTAV VGARVTLPCR VINKQGTLQW  60
   61 TKDDFGLGTS RDLSGFERYA MVGSDEEGDY SLDIYPVMLD DDARYQCQVS PGPEGQPAIR 120
  121 STFAGLTVLV PPEAPKITQG DVIYATEDRK VEIECVSVGG KPAAEITWID GLGNVLTDNI 180
  181 EYTVIPLPDQ RRFTAKSVLR LTPKKEHHNT NFSCQAQNTA DRTYRSAKIR VEVKYAPKVK 240
  241 VNVMGSLPGG AGGSVGGAGG GSVHMSTGSR IVEHSQVRLE CRADANPSDV RYRWFINDEP 300
  301 IIGGQKTEMV IRNVTRKFHD AIVKCEVQNS VGKSEDSETL DISYAPSFRQ RPQSMEADVG 360
  361 SVVSLTCEVD SNPQPEIVWI QHPSDRVVGT STNLTFSVSN ETAGRYYCKA NVPGYAEISA 420
  421 DAYVYLKGSP AIGSQRTQYG LVGDTARIEC FASSVPRARH VSWTFNGQEI SSESGHDYSI 480
  481 LVDAVPGGVK STLIIRDSQA YHYGKYNCTV VNDYGNDVAE IQLQAKKSVS LLMTIVGGIS 540
  541 VVAFLLVLTI LVVVYIKCKK RTKLPPADVI SEHQITKNGG VSCKLEPGDR TSNYSDLKVD 600
  601 ISGGYVPYGD YSTHYSPPPQ YLTTCSTKSN GSSTIMQNNH QNQLQLQQQQ QQSHHQHHTQ 660
  661 TTTLPMTFLT NSSGGSLTGS IIGSREIRQD NGLPSLQSTT ASVVSSSPNG SCSNQSTTAA 720
  721 TTTTTHVVVP SSMALSVDPR YSAIYGNPYL RSSNSSLLPP PTAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..764] PSI-BLAST 57.69897 Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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