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Protein Overview: Edem1-PA, FBpp02...

General Information:
Name(s) found: FBpp0294034 [FlyBase]
Edem1-PA / FBpp0070339 [FlyBase]
Edem1-PB / FBpp0070338 [FlyBase]
Edem1-PC / FBpp0070337 [FlyBase]
Description(s) found:
Found 56 descriptions.
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  • type=protein; loc=X:complement(1798574..1800268,1800339..1801467,1801528..1801652); ID=FBpp0294034; name=Edem1-PD; parent=FBgn0023511,FBtr0305583; dbxref=REFSEQ:NP_001245483,GB_protein:AFH07197,FlyBase:FBpp0294034,FlyBase_Annotation_IDs:CG3810-PD; MD5=e42058527e1f94f38696e049efd55e54; length=982; release=r5.56; species=Dmel; [FlyBase]
  • The gene Edem1 is referred to in FlyBase by the symbol Dmel\Edem1 (CG3810, FBgn0023511). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:1797737..1802860. It has the cytological map location 2B15. Based on sequence similarity, it is predicted to have molecular function</span>: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. There is experimental evidence that it is involved in the biological process</span>: determination of adult lifespan. 7 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • The gene Edem1 is referred to in FlyBase by the symbol Dmel\Edem1 (CG3810, FBgn0023511). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:1797737..1802860. It has the cytological map location 2B15. Based on sequence similarity, it is predicted to have molecular function</span>: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. There is experimental evidence that it is involved in the biological process</span>: determination of adult lifespan. 7 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • The gene Edem1 is referred to in FlyBase by the symbol Dmel\Edem1 (CG3810, FBgn0023511). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:1797737..1802860. It has the cytological map location 2B15. Based on sequence similarity, it is predicted to have molecular function</span>: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. There is experimental evidence that it is involved in the biological process</span>: determination of adult lifespan. 7 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 982 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    Biological Process: determination of adult lifespan [IMP]
    ER-associated protein catabolic process [NAS]
    Molecular Function: calcium ion binding [IEA]
    mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQKPRNNGY PGTLICAVLL VLLSTGVSGQ KQYSKARKLE LREDVRRMFQ HAYDGYLRHA  60
   61 SNYDELRPLT CDGHDTWGSY SLTLIDALDT LATMGNFTEF RRAARLLEEK MDFDRDINVS 120
  121 VFETNIRIVG GLLSAHLLSK RAGVELEPGW PCKGPLLRLA EDVARRLLPA FVTNTGMPYG 180
  181 TVNLRYGVPK GETSITCTAG VGTFLIEFGT LSRLTGKTIY EDVAMKAVHA LWAYRSPIGL 240
  241 FGNHIDVQSG RWTALDSGIG AGVDSLFEYL VKASVLLNRP ELLELFHEAR AAIDKYMRKE 300
  301 DWYVWVGMNK GRVTLPVFQS LEAFWPGILS IIGDTEPALR TISRYIGVWK KYGFLPEFYN 360
  361 IAAGEASPNR EVYPLRPELI ESAMYLYRAT GNEYLLEFGE HMLETLEFSA KTKCGYATIR 420
  421 NVVTHEKENR MESFFLAETS KYLYLLFDEE NFLHNDGSGG ELLSTEDDVC VVQAGAYIFN 480
  481 TEAHPMDMSA LHCCHAHNED IYTSLDLQRF SPRAILERSK KRQVAVQEQW VPQCHPENNE 540
  541 FFNKEDESVQ AQDSEKEQER EQSGTSTTMA VDIEVFDEFQ QPAGDLLVSN FEQIREEREL 600
  601 NESLHRNVVA RNQLTVSDLD EFFAQRRESF ASASEALNYV KTFMGNYTMD VAFIRGLQLY 660
  661 DTNMSSVLGT GAQKEYESRM RTLWQLYELQ QQYVANIRVI QGLGLLTFPA DGDRIPSHLT 720
  721 EVLDSLDKSA HLEHMDLQDL ETRVSNTSSP QLAHIREVIL KARNAYAIAM VNTSAMQEFA 780
  781 IRIYLSGTSE AGVRIHPLLE DGELSEEARK RPLKLAEERA LFSYARRIVD FRKRMAETVD 840
  841 RLQTLMQDIP PPKRKEATTD SQAADASTVY TQTKAQMAAP AQQPEPSQEE KQSTQIQKGK 900
  901 LAENGSGLGE EESGCVWSQL VQTILRKTTV QRVKFDEAVL QENTRKALEK YARKELPHHL 960
  961 FACHRPEYIE GFAYRDFYPE AL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..490] PSI-BLAST 160.0 Structure of mouse Golgi alpha-1,2-mannosidase IA reveals the molecular basis for substrate specificity among Class I enzymes (family 47 glycosidases)
    2 View Details [491..645] MSA 3.050983 View MSA. No confident structure predictions are available.
    3 View Details [646..898] deduced N/A No confident structure predictions are available.
    4 View Details [899..982] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
    		•  4.49187091491308 bayes_pls_golite062009
  • mannosyl-oligosaccharide mannosidase activity
    		•  4.31101035324444 bayes_pls_golite062009
  • mannosidase activity
    		•  4.13262307600704 bayes_pls_golite062009
  • hydrolase activity
    		•  2.37587225454998 bayes_pls_golite062009
  • catalytic activity
    		•  1.68917300409014 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  1.48699707323226 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  1.32469433621478 bayes_pls_golite062009
  • binding
    		•  0.581699672540981 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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