YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: trr-PD

General Information:
Name(s) found: trr-PD / FBpp0070347 [FlyBase]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • The gene trithorax-related is referred to in FlyBase by the symbol Dmel\trr (CG3848, FBgn0023518). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:1775340..1783808. It has the cytological map location 2B14. There is experimental evidence that it has the molecular function</span>: receptor binding; histone methyltransferase activity (H3-K4 specific); transcription coactivator activity. There is experimental evidence that it is involved in the biological process</span>: progression of morphogenetic furrow during compound eye morphogenesis; histone methylation; compound eye development; positive regulation of transcription. 7 alleles are reported. The phenotypes of these alleles are annotated with: eye; ommatidium; morphogenetic furrow. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 2431 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][NAS]
    polytene chromosome [IDA]
    Biological Process: histone methylation [IDA]
    smoothened signaling pathway [NAS]
    positive regulation of transcription [IGI]
    progression of morphogenetic furrow during compound eye morphogenesis [IGI][IMP]
    compound eye development [IMP][NAS]
    Molecular Function: histone methyltransferase activity (H3-K4 specific) [IDA]
    DNA binding [IEA][NAS]
    zinc ion binding [IEA]
    transcription coactivator activity [IGI]
    histone methyltransferase activity [NAS]
    receptor binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIPKVTTSL GAAEKAKPER VASVAAAAFN AVSLQKRSGD DTATPAEDPT RKKAKTELLL  60
   61 GTGTAAPSLP AKASSTAPQQ LLYQRSGQQA KAQVKAASEP QDVETADGVW DARDQQIIVC 120
  121 NFGSGTEMGA IKAEDADKQS EYRISTPRNS QSNPLLHRNT AFTSFTKKEG ASSSASSSSS 180
  181 TASVISIEPS GSGQDHAENS GKSEDLDYVL MPASGADSST SVGNSTGTGT PAGTPIGATT 240
  241 STIILNANNG TAGVSGAGTT TILTQKSGHT NYNIFNTTAT GSQTPTTTLL NRVNLHPKMK 300
  301 TQLMVNAKKL SEVTQTTAKV SIGNKTISVP LLKPLMSASG AATAGGATIV ESKQLLQPGG 360
  361 QVTTVMSAAQ QSGGQQVHPH VHSHAHHNFT KLIKRGPKNS GTIVSFSGLQ IKPANTKIVA 420
  421 TKVVSKKMLQ LQQHQQQIQQ QQQLQQLQVT SGGGLAPPTG SIVTITTTNP SQTYAMVQDS 480
  481 ATVGPAAHSE DDAPAPRKIT AYSENLQKIL NKSKSQESTG GPEEFTNINS VVIKPLDKNT 540
  541 LNCPPSFNIF KQQQHSQAAQ SQSISAVGSG AGTPVTFTMA SGNASDLATT STVSVSAGTI 600
  601 CINSPMMGTR PIISIQNKNI SLVLSKTTMA QQKPKMITTT TLSSQAALQM HHALIQDSSA 660
  661 DKAGSSANSG SATSGASMQL KLTTANTPTK LSVSLAPDVV KLEEVGSESK AKLLVKQEAV 720
  721 VKDSTGTPTS EERAEEIGTP EKRLNANATM TAINQVQNQS ANQIQMATST STASNPSTPN 780
  781 PTVNATPMNN QRSAAEDNAL LKQLLQNNSS SHSLNQISIT SAHVGSASAS APLSARKVIN 840
  841 VRAPSMGKVR SLEDQLARPV IPPVPTATQA AGSSSSSGSV ATSTTTTTVA SGGSSQQVAT 900
  901 ASATALPVSA VAITTPGVGG EAKLEQKSDQ PAAIMQNQSQ NQAPPPPPPP QQQQQQQLHQ 960
  961 PQQLQPSPHQ VKQTVQIVSK ETSFISGPVA AKTLVTEATS KPAELLPPPP YEMATAPISN1020
 1021 VTISISTKQA APKELQMKPK AVAMSLPMEQ GDESLPEQAE PPLHSEQGAT AAGVAPHSGG1080
 1081 PLVSAQWTNN HLEGGVATTK IPFKPGEPQK RKLPMHPQLD EKQIQQQAEI PISTSLPTTP1140
 1141 TGQGTPDKVQ LISAIATYVK KSGVPNEAQP IQNQSQGQVQ MQAQMQATMQ GHLSGQMSGQ1200
 1201 ISGHAAGQIP AQMHLQVQHQ LHMAVHPQQQ QQQLHQNQPQ NATIPLPVTG QGAVPIPVPT1260
 1261 MESKAGDQRK RRKREVQKPR RTNLNAGQAG GALKDLTGPL PAGAMVQLAG MPPGTQYIQG1320
 1321 AASGTGHVIT STGQGVTLGG VGASTGASSS PMLKKRVRKF SKVEEDHDAF TEKLLTHIRQ1380
 1381 MQPLQVLEPH LNRNFHFLIG SNETSGGGSP ASMSSAASAG SSSAGGGKLK GGSRGWPLSR1440
 1441 HLEGLEDCDG TVLGRYGRVN LPGIPSLYDS ERFGGSRGLV GGSARTRSPS PAESPGAEKM1500
 1501 LPMSSIQNDF YDQEFSTHME RNPRERLVRH IGAVKDCNLE TVDLVESEGV AAWATLPRLT1560
 1561 RYPGLILLNG NSRCHGRMSP VALPEDPLTM RFPVSPLLRS CGEELRKTQQ MELGMGPLGN1620
 1621 NNNNNYQQKN QNVILALPAS ASENIAGVLR DLANLLHLAP ALTCKIIEDK IGNKLEDQFM1680
 1681 NQDDEKHVDF KRPLSQVSHG HLRKILNGRR KLCRSCGNVV HATGLRVPRH SVPALEEQLP1740
 1741 RLAQLMDMLP RKSVPPPFVY FCDRACFARF KWNGKDGQAE AASLLLQPAG GSAVKSSNGD1800
 1801 SPGSFCASST APAEMVVKQE PEDEDEKTPS VPGNPTNIPA QRKCIVKCFS ADCFTTDSAP1860
 1861 SGLELDGTAG AGTGAGPVNN TVWETETSGL QLEDTRQCVF CNQRGDGQAD GPSRLLNFDV1920
 1921 DKWVHLNCAL WSNGVYETVS GALMNFQTAL QAGLSQACSA CHQPGATIKC FKSRCNSLYH1980
 1981 LPCAIREECV FYKNKSVHCS VHGHAHAGIT MGAGAGATTG AGLGGSVADN ELSSLVVHRR2040
 2041 VFVDRDENRQ VATVMHYSEL SNLLRVGNMT FLNVGQLLPH QLEAFHTPHY IYPIGYKVSR2100
 2101 YYWCVRRPNR RCRYICSIAE AGCKPEFRIQ VQDAGDKEPE REFRGSSPSA VWQQILQPIT2160
 2161 RLRKVHKWLQ LFPQHISGED LFGLTEPAIV RILESLPGIE TLTDYRFKYG RNPLLEFPLA2220
 2221 INPSGAARTE PKQRQLLVWR KPHTQRTAGS CSTQRMANSA AIAGEVACPY SKQFVHSKSS2280
 2281 QYKKMKQEWR NNVYLARSKI QGLGLYAARD IEKHTMIIEY IGEVIRTEVS EIREKQYESK2340
 2341 NRGIYMFRLD EDRVVDATLS GGLARYINHS CNPNCVTEIV EVDRDVRIII FAKRKIYRGE2400
 2401 ELSYDYKFDI EDESHKIPCA CGAPNCRKWM N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..70] deduced N/A No confident structure predictions are available.
    2 View Details [71..263] deduced N/A No confident structure predictions are available.
    3 View Details [264..405] MSA 1.160987 View MSA. No confident structure predictions are available.
    4 View Details [406..589] MSA 1.158986 View MSA. No confident structure predictions are available.
    5 View Details [590..828] deduced N/A No confident structure predictions are available.
    6 View Details [829..1050] deduced N/A No confident structure predictions are available.
    7 View Details [1051..1133] deduced N/A No confident structure predictions are available.
    8 View Details [1134..1351] MSA 1.136988 View MSA. No confident structure predictions are available.
    9 View Details [1352..1454] deduced N/A No confident structure predictions are available.
    10 View Details [1455..1590] MSA 1.101987 View MSA. No confident structure predictions are available.
    11 View Details [1591..1669] deduced N/A No confident structure predictions are available.
    12 View Details [1670..1843] deduced N/A No confident structure predictions are available.
    13 View Details [1844..2024] FFAS03 1.14 No description for 2jm1A was found.
    14 View Details [2025..2133] deduced N/A No confident structure predictions are available.
    15 View Details [2134..2431] PSI-BLAST 66.09691 No description for 2r3aA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.73

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle