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Protein Overview: CG5273-PA, CG527...

General Information:
Name(s) found: CG5273-PB / FBpp0070132 [FlyBase]
CG5273-PC / FBpp0070131 [FlyBase]
CG5273-PA / FBpp0070130 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|7290079|gb|AAF45545.1| CG5273, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|33636495|gb|AAQ23545.1| RE67565p [Drosophila melanogaster] [NCBI NR]
  • gi|24638963|ref|NP_726699.1| CG5273, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|24638961|ref|NP_726698.1| CG5273, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|22831446|gb|AAN09031.1| CG5273, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|22831445|gb|AAN09030.1| CG5273, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|20128813|ref|NP_569857.1| CG5273, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|108745444|gb|ABG02857.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745442|gb|ABG02856.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745440|gb|ABG02855.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745438|gb|ABG02854.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745436|gb|ABG02853.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745434|gb|ABG02852.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745432|gb|ABG02851.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745430|gb|ABG02850.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745428|gb|ABG02849.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745426|gb|ABG02848.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745424|gb|ABG02847.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745422|gb|ABG02846.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745420|gb|ABG02845.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745416|gb|ABG02843.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745414|gb|ABG02842.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745412|gb|ABG02841.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745410|gb|ABG02840.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745408|gb|ABG02839.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745406|gb|ABG02838.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745404|gb|ABG02837.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745402|gb|ABG02836.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745400|gb|ABG02835.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745398|gb|ABG02834.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745396|gb|ABG02833.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745394|gb|ABG02832.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • gi|108745392|gb|ABG02831.1| CG5273 [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG5273 (CG5273, FBgn0040382). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:653628..655972. It has the cytological map location 1C4. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: regulation of circadian rhythm. 5 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • >CG5273-PA translation from_gene[CG5273 EG:BACR19J1.3 FBgn0040382] seq_release:3 mol_weight=46489 cds_boundaries:(X:517,236..518,795[+]) aa_length:469 transcript_info:[CG5273-RA seq_release:3] gene_info:[gene symbol:EG:BACR19J1.3 FBgn0040382 gene_bound [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG5273-PC translation from_gene[CG5273 EG:BACR19J1.3 FBgn0040382] seq_release:3 mol_weight=46489 cds_boundaries:(X:517,236..518,795[+]) aa_length:469 transcript_info:[CG5273-RC seq_release:3] gene_info:[gene symbol:EG:BACR19J1.3 FBgn0040382 gene_bound [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG5273-PB translation from_gene[CG5273 EG:BACR19J1.3 FBgn0040382] seq_release:3 mol_weight=46489 cds_boundaries:(X:517,236..518,795[+]) aa_length:469 transcript_info:[CG5273-RB seq_release:3] gene_info:[gene symbol:EG:BACR19J1.3 FBgn0040382 gene_bound [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W5D6) CG5273 protein [DrosMelano7227.FASTAC.txt]
  • (AE003418) EG:BACR19J1.3 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG5273-PC, isoform C [Drosophila melanogaster]gi|22831445|gb|AAN09030.1| CG5273-PB, isoform B [Drosophila melanogaster]gi|7290079|gb|AAF45545.1| CG5273-PA, isoform A [Drosophila melanogaster]gi|33636495|gb|AAQ23545.1| RE67565p [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070130; name=CG5273-PA; parent=FBgn0040382,FBtr0070135; dbxref=FlyBase:FBpp0070130,FlyBase_Annotation_IDs:CG5273-PA,GB_protein:AAF45545.1,REFSEQ:NP_569857,GB_protein:AAF45545; MD5=a392d25712 [fly-100309-contam.fasta]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070131; name=CG5273-PC; parent=FBgn0040382,FBtr0070136; dbxref=FlyBase:FBpp0070131,FlyBase_Annotation_IDs:CG5273-PC,GB_protein:AAN09031.1,REFSEQ:NP_726699,GB_protein:AAN09031; MD5=a392d25712 [fly-100309-contam.fasta]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070132; name=CG5273-PB; parent=FBgn0040382,FBtr0070137; dbxref=FlyBase:FBpp0070132,FlyBase_Annotation_IDs:CG5273-PB,GB_protein:AAN09030.1,REFSEQ:NP_726698,GB_protein:AAN09030; MD5=a392d25712 [fly-100309-contam.fasta]
  • CG5273-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG5273 [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE67565p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG5273-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG5273-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070130; name=CG5273-PA; parent=FBgn0040382,FBtr0070135; dbxref=FlyBase:FBpp0070130,FlyBase_Annotation_IDs:CG5273-PA,GB_protein:AAF45545.1,REFSEQ:NP_569857,GB_protein:AAF45545; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070131; name=CG5273-PC; parent=FBgn0040382,FBtr0070136; dbxref=FlyBase:FBpp0070131,FlyBase_Annotation_IDs:CG5273-PC,GB_protein:AAN09031.1,REFSEQ:NP_726699,GB_protein:AAN09031; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070132; name=CG5273-PB; parent=FBgn0040382,FBtr0070137; dbxref=FlyBase:FBpp0070132,FlyBase_Annotation_IDs:CG5273-PB,GB_protein:AAN09030.1,REFSEQ:NP_726698,GB_protein:AAN09030; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070130; name=CG5273-PA; parent=FBgn0040382,FBtr0070135; dbxref=FlyBase:FBpp0070130,FlyBase_Annotation_IDs:CG5273-PA,GB_protein:AAF45545.1,REFSEQ:NP_569857,GB_protein:AAF45545; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070131; name=CG5273-PC; parent=FBgn0040382,FBtr0070136; dbxref=FlyBase:FBpp0070131,FlyBase_Annotation_IDs:CG5273-PC,GB_protein:AAN09031.1,REFSEQ:NP_726699,GB_protein:AAN09031; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070132; name=CG5273-PB; parent=FBgn0040382,FBtr0070137; dbxref=FlyBase:FBpp0070132,FlyBase_Annotation_IDs:CG5273-PB,GB_protein:AAN09030.1,REFSEQ:NP_726698,GB_protein:AAN09030; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG5273 OS=Drosophila melanogaster GN=EG:BACR19J1.3 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070130; name=CG5273-PA; parent=FBgn0040382,FBtr0070135; dbxref=FlyBase:FBpp0070130,FlyBase_Annotation_IDs:CG5273-PA,GB_protein:AAF45545.1,REFSEQ:NP_569857,GB_protein:AAF45545,FlyMine:FBpp0070130,modMine:FBpp0070130; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070131; name=CG5273-PC; parent=FBgn0040382,FBtr0070136; dbxref=FlyBase:FBpp0070131,FlyBase_Annotation_IDs:CG5273-PC,GB_protein:AAN09031.1,REFSEQ:NP_726699,GB_protein:AAN09031; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:join(653832..654561,654715..655394); ID=FBpp0070132; name=CG5273-PB; parent=FBgn0040382,FBtr0070137; dbxref=FlyBase:FBpp0070132,FlyBase_Annotation_IDs:CG5273-PB,GB_protein:AAN09030.1,REFSEQ:NP_726698,GB_protein:AAN09030; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG5273 OS=Drosophila melanogaster GN=EG:BACR19J1.3 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070130; name=CG5273-PA; parent=FBgn0040382,FBtr0070135; dbxref=FlyBase:FBpp0070130,FlyBase_Annotation_IDs:CG5273-PA,GB_protein:AAF45545.1,REFSEQ:NP_569857,GB_protein:AAF45545,FlyMine:FBpp0070130,modMine:FBpp0070130; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070131; name=CG5273-PC; parent=FBgn0040382,FBtr0070136; dbxref=FlyBase:FBpp0070131,FlyBase_Annotation_IDs:CG5273-PC,GB_protein:AAN09031.1,REFSEQ:NP_726699,GB_protein:AAN09031; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070132; name=CG5273-PB; parent=FBgn0040382,FBtr0070137; dbxref=FlyBase:FBpp0070132,FlyBase_Annotation_IDs:CG5273-PB,GB_protein:AAN09030.1,REFSEQ:NP_726698,GB_protein:AAN09030; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070130; name=CG5273-PA; parent=FBgn0040382,FBtr0070135; dbxref=FlyBase:FBpp0070130,FlyBase_Annotation_IDs:CG5273-PA,GB_protein:AAF45545.1,REFSEQ:NP_569857,GB_protein:AAF45545,FlyMine:FBpp0070130,modMine:FBpp0070130; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070131; name=CG5273-PC; parent=FBgn0040382,FBtr0070136; dbxref=FlyBase:FBpp0070131,FlyBase_Annotation_IDs:CG5273-PC,GB_protein:AAN09031.1,REFSEQ:NP_726699,GB_protein:AAN09031; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070132; name=CG5273-PB; parent=FBgn0040382,FBtr0070137; dbxref=FlyBase:FBpp0070132,FlyBase_Annotation_IDs:CG5273-PB,GB_protein:AAN09030.1,REFSEQ:NP_726698,GB_protein:AAN09030; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0070130 type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070130; name=CG5273-PA; parent=FBgn0040382,FBtr0070135; dbxref=FlyBase:FBpp0070130,FlyBase_Annotation_IDs:CG5273-PA,GB_protein:AAF45545.1,REFSEQ:NP_569857,GB_protein:AAF45545,FlyMine:FBpp0070130,modMine:FBpp0070130; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0070131 type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070131; name=CG5273-PC; parent=FBgn0040382,FBtr0070136; dbxref=FlyBase:FBpp0070131,FlyBase_Annotation_IDs:CG5273-PC,GB_protein:AAN09031.1,REFSEQ:NP_726699,GB_protein:AAN09031; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0070132 type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070132; name=CG5273-PB; parent=FBgn0040382,FBtr0070137; dbxref=FlyBase:FBpp0070132,FlyBase_Annotation_IDs:CG5273-PB,GB_protein:AAN09030.1,REFSEQ:NP_726698,GB_protein:AAN09030; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070130; name=CG5273-PA; parent=FBgn0040382,FBtr0070135; dbxref=FlyBase:FBpp0070130,FlyBase_Annotation_IDs:CG5273-PA,GB_protein:AAF45545.1,REFSEQ:NP_569857,GB_protein:AAF45545,UniProt/TrEMBL:Q9W5D6,FlyMine:FBpp0070130,modMine:FBpp0070130; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070131; name=CG5273-PC; parent=FBgn0040382,FBtr0070136; dbxref=FlyBase:FBpp0070131,FlyBase_Annotation_IDs:CG5273-PC,GB_protein:AAN09031.1,REFSEQ:NP_726699,GB_protein:AAN09031,UniProt/TrEMBL:Q9W5D6; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=X:join(759799..760528,760682..761361); ID=FBpp0070132; name=CG5273-PB; parent=FBgn0040382,FBtr0070137; dbxref=FlyBase:FBpp0070132,FlyBase_Annotation_IDs:CG5273-PB,GB_protein:AAN09030.1,REFSEQ:NP_726698,GB_protein:AAN09030,UniProt/TrEMBL:Q9W5D6; MD5=a392d2571272b58945a7bd16b0d78915; length=469; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 469 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of circadian rhythm [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMASSGGACS PFAYVAWALF ALLLTHGGDN VVDARRNQGN QRKTSSSSSS SNYGHVTQPS  60
   61 YNTNGHAAGN SHADVAKLSY PNYNSQPNRP MAAGSSGSPG SAPQPGWNVP QGPPPAYSAS 120
  121 NPAGGARPNM HEPPPAYHAP NYGAAPPNYG AATGSNVHQP QYSGVPAGAT YYPAAGPGSG 180
  181 YSPNIPAGAT YYPSAGHVPM GGGYHPAAAP PPGATYYQAG SALPPGATYY SAPPQQSSSG 240
  241 LGFGTGLLAG GLGGALLGHA LTPSGGSSSS QPVAAAPAAG QDRIIIINNG VPVNASDGTT 300
  301 VINAAGVAAA PGAVPAAPVP SSNTTQDAQQ PAVPMAPMPF NPETSNMTAP DPAAPPPPGG 360
  361 IICVPTKVNE TDPADSTKMI EVEKIACYPA PPPPAASAGE GPAPLAPMAA DQPGSQQVQQ 420
  421 VQQAQDVAAP IQASVRSHTG GARALEGLTM RTLLLVLMSG VVAKRLAGF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..176] MSA 1.173991 View MSA. No confident structure predictions are available.
    2 View Details [177..302] MSA 3.182982 View MSA. No confident structure predictions are available.
    3 View Details [303..469] MSA 3.176994 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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