YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5273-PA, CG527...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.64
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMASSGGACS PFAYVAWALF ALLLTHGGDN VVDARRNQGN QRKTSSSSSS SNYGHVTQPS  60
   61 YNTNGHAAGN SHADVAKLSY PNYNSQPNRP MAAGSSGSPG SAPQPGWNVP QGPPPAYSAS 120
  121 NPAGGARPNM HEPPPAYHAP NYGAAPPNYG AATGSNVHQP QYSGVPAGAT YYPAAGPGSG 180
  181 YSPNIPAGAT YYPSAGHVPM GGGYHPAAAP PPGATYYQAG SALPPGATYY SAPPQQSSSG 240
  241 LGFGTGLLAG GLGGALLGHA LTPSGGSSSS QPVAAAPAAG QDRIIIINNG VPVNASDGTT 300
  301 VINAAGVAAA PGAVPAAPVP SSNTTQDAQQ PAVPMAPMPF NPETSNMTAP DPAAPPPPGG 360
  361 IICVPTKVNE TDPADSTKMI EVEKIACYPA PPPPAASAGE GPAPLAPMAA DQPGSQQVQQ 420
  421 VQQAQDVAAP IQASVRSHTG GARALEGLTM RTLLLVLMSG VVAKRLAGF

Type	Start	End	Confidence
Signal Peptide	1	27	0.84
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	240	0.90
Transmembrane Helix	241	261	0.70
Cytoplasmic	262	446	0.62
Transmembrane Helix	447	467	0.40
Non-Cytoplasmic	468	469	0.66