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Protein Overview: CG9935-PA

General Information:
Name(s) found: CG9935-PA / FBpp0088171 [FlyBase]
Description(s) found:
Found 18 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG9935 (CG9935, FBgn0039916). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 4:656751..667182. It has the cytological map location 102D1. Based on sequence similarity, it is predicted to have molecular function</span>: kainate selective glutamate receptor activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: ion transport. 4 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 669 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    Biological Process: ion transport [IEA]
    Molecular Function: kainate selective glutamate receptor activity [ISS]
    extracellular-glutamate-gated ion channel activity [IEA]
    ionotropic glutamate receptor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIASGFLLF QFLSYGLGVP PLVRIGAIFS NQPGMYNSEL AFRYAIHRLN MDKSLLPETT  60
   61 VDYYVEYVNR FDSFETVQKV CKLIRVGVQA VFSPTDSVLA THINSICDAL DIPNIGRSAH 120
  121 DFSINVYPSK QLVNYAFNDV IQYLNWTRFG ILHEKENGII NLHQLSRSFH GEVHMRQVSR 180
  181 DSYVSALNEF KGKEIHNIII DTNSNGISIL LKNILQQQMN EYKYHYLFTS FDLETYDLED 240
  241 FKYNFVNITS FRLVDTADVG VKQILKDIGL YSHHIFKKPY LNLHIKKSTI LESEPALMFD 300
  301 SVYVFAIGLQ TLEQSHSLTL LNISCEEENS WDGGLSLINY LNAVEWKGLT GPIQFKDGQR 360
  361 VQFKLDLIKL KQHSIVKVGE WTPHGHLNIT EPSMFFDAGS MNVTLVVITI LETPYVMMHY 420
  421 GKNFTGNERF YGFCVDILET ISREVGFDYI LDLVPDRKYG AKDPETGEWN GMVAQLMKYK 480
  481 ADLAVGSMTI TYARESVIDF TKPFMNLGIS ILFKVPTSEP TRLFSFMNPL AIEIWIYVLI 540
  541 AYFLVSLCIY IVGKLSPIEW KCINACDLEN ISIGNQFSLT DSFWFTIGTF MQQSPDIYPR 600
  601 AMSTRIISST WGFFSLIIVA SYTANLAAFL TTERMINPIE NAEDLASQTE ISYGTLDSGS 660
  661 TMTFFRVCN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..419] FFAS03 6.21 No description for 2e4zA was found.
    2 View Details [420..554] PSI-BLAST 17.522879 Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
    3 View Details [555..669] MSA 9.505993 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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